RNA id: TCONS_00029966


Basic Information

Item Value
RNA id TCONS_00029966
length 9431
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_014149
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31943508 ~ 31954728 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGCCGAAAAAAATCGTCTTTATTTTTCCGTGACCAATAACCAGGAGCTCATAGGAACACAGGCACCTTAGAAAAGGTCTTTTACAccaaagaaaacaacaacagcgGCACTGACGAGCACCAGAACATTGTCACCGTAGCACAATTACAATGGCAGTTTCTATTTACACACAGCTCAGAgtaaaaactagtacagccagcaagtgagatagatagataataacaGTCACCAAGTGTTTTCTCCCTCAGGAGACGAAAATCTATTCAACTTTGGGAAAACCAAAAAGAAACAGAACGCTGCAATCATATAAACACTGTTAAGACATTGTACATATAGCAAGTGCTTTCAGTTAATGTATTGCGATATTTTATCAAGTCCAGATAACAATATCATCAGCTCCTTCTATGGTCCTAAATCCACAGACGACACTAGTGcgagtaaatgtaaaaataatcgcGTCTATTGTGAGTTATGTTATCAGGTGTTGCCGTGAACCTGTGCACTAAAGCATAAAATTGCATAATTGTATCCGAGTGAACACAGACTAGACACCCACGATGACAATATAGTGGCACGAAGCCTTAAAAATATCCTCTAATTAAGGCCCTCATTTCTGCTGATACTCAACACCGTTTAACAATATAGGGCTACATGTGTTTTCATTCCATTAGTGAACAGCTTTCAGCAGCAGTCGTCATCATTAAGACAAAACCCTCTGAACCTCAAATCTTTCTCCACTGTATTATGATGAGGGGAGCGTGTCAGAGAGAAAACCCGCGAACCTGCCAGCAGTGGCGCGAAACGTAACTGTGACGCGCTCAGCTTGACCTGGCAATAAGTGACGTCGGCATTAAACCCAGGATGAAGTGTTATTATTGTTGACGTGGGCCGCTCATTTATCTCATCACTTCAAATACAGGTCAGTGTGCGTTTCAGGCGACACCTACATCGCAGATAAAGAGCTTGGACGTCTTAACAAGTTGGTCACTGAGGGGACGTTCATGCAGAACCaggttttgcatttaaaaacgCCAGAAGCTGCACTGAGGGACAAATTGGCaagaatttaaatgaaaaaCTAGCAGCGGCATGCAAAGATGAAGACATCCTGAGTTTTCCCGTTTTTACACAGTAGACTTCCATCATGTGCACAGGGCATCAGATGCCCATCCTTAACATCAAACAATACTTCAAATCAGGAATGTCAACTGAACAGACAATGGGACAGAATGTgtgaacaaaagttttttttttttttttttaaaaagcacagttGGGGCTGACTATATTGGCCCTTGAGATGAGCTGGACTTTTGTTTTGGACATTTCGAAGTGCTTACTGAATGTAGGATCTATCAGGCATTGGCAATCTTCACCTCTGCTGTGGGGATCAGAAGCTGTTTCTTTTATCATCAgcatctgtttgtttttatgtcagccactcttctctttctcttttaaTGGGCTATAAAATCACTTGATGTGAGCACATGATGCTAAATATAGAACAGGTCTAAGAAGAAGCCTCACAAATTTGGCCTCCAACTCAGACCCAGTGGAATGACTAAAGAATATGGCAGTTTCTATCAgcacttcagccaatcagagttgAGTGCActcttttaaagggacagttcaccaaaaacatattttctcatttacttacccaccaaaccggtttgattaaatgtgttttatggaACACAAAATATGTTTGAAACATAGTTAACAATTTAGCTGTATAAGCCATTtgggctcaatcccaattctatttgtttacccctaccccttggcccttgaaggacttgtgaaggggaagggcttcaaattttacccctaagaaatgggacaccactacaataCGCCATCATGATCTATgaataaagatttaaatgttttaaaagcatatgcttgtttgttgtaaaaaaatcttaataatgcCAAAAATACTtagaaataaatagattttttttaccccTTGGCTTTGAGTGTagtctctgtttcaagggctatcaAGCTCTTCCCCTTAACCCTACACCTTAAAACTGAAGATAATTGGGTCACCTCTATCCCTTCACGTGTAAGACAAGGGGTAGGGCTtagaggtagaattgggattgggcccttgttaaattttttatttaaaaaaaatagtgagTGGGGTTGTGCAAAATGTATCGTTTACAgccttattttaattatttattggtcACAATATGTTAGATGACATTAAtcacttagaaaaaaaaactgtagcagAACATTTATTCACAACTGCTTTTGGATGAATTATTTATGTCCAAGATTCAATGATCTATTAAAAAGTAAGTCTACTTATGAGCCGTTTTAAACAAACTGAATATTTCAATGACTTACTAGTAGACAtggatttgtttttaatgtttatcatGGATATAAATCCAAGAAACCAGCTCAAAACACACTCAgccaaaaatattgttattataatcCTGAAAATCCCCAATACACCAAGATATGTTTTTTGGTTTCTGTCAACATTGCACACCCCTACTTGCAAGTCTTCATATTCAAACTTATTCTGTTGCATTTAGTAATATGACTGAAAATATAAAACATCTCTTTTGtgtcacacacataaaaaaaaaaaaatcatgtgggTTTGGGAaagacatgagggtgaataaatgatttttgctattattattattattattatttttttttggctgaacAGTCCCTTTAAAATAGCCAAAGGAGAAGTCAATTGTGTCAGAACATTTGATGAAAACGTGACTATTAATATATGCTGCAATCGCATgactaaaatgaatacattttcagaGGAAGTTGTCTTTGCAAGTCATTAAAGTAACAGCAGCCTGCCTGCCctgtgcctgttttttttttgtttagtttttttttacagataaaacatcacaaacaacacATTCATAAATTTTAgatcatagtttttttttgtttgtttcttcggCATGCACATGCAGTATTAAAAATACAGTTAGATCAGCAAATActtgaaaaagtgtaaaaatccAGTGCGACAGTCTTTGAGTTCTTGAGGTTAACATGGTTCTTGATTGACAATGTTCAGCAGTGAGATAATCCATTCAGAGCACTGAGCCTACACTTCCATTGGTTTCTTCTCGAAGTAAAGCATCTTTAGGGGTTTTGGGAGGGCTGGAAACTTTTTTGCATGTCCTGCTTGTTCTGTAGGATCTACACAATTCAGtccaaataaaaactaaatcatgAATATGGATCTGTGATAATTGAGGAAAGctttgattttattaaataaatatatgtgctGCAATGTGTTTGTTTATGCACAAGCGGCTCAtgatacaatgttttttttgtcttAGAGCAGCTCAGTTGACAGTAAATCTTGCTTTAGACAAACTCATCTCTGCATCTGCTCTGAGTTTACCTTGCTTATATTGTGCAATAGGGAACGCAGCATGCGCTGTTCATTCTCCCAAATGTGTAATGAGAAGCTCTTAAATCAAGTGCCTCCGATTAAATGAAAGCCTTAAAGTTATAGTTTAACCAACAATGAAAATTCTGTCTAATTTGACTAATTTGAGTTTAATACAtgtgttgagcacaaaagaagatgttttgaagaatgttggaaaacaaaCAATTGGCAATAACcaatgtgttaatttttttttcaaggaaAGTCGGTGGCTACGATCAACTGTCTGGTTTcttcaaaatgtgtttttttttttgatgatcaaAAGAAGAAACTCACAATTTGAGGGTGAGAAATGAATATTTTTGCCAGAACTATCTTTTTTAGGAttctcttcagtttttttttaataaaagcttaatggtttaacatttaatcaatttatttgggAAGGCCTACATTTTACTATTGTAGTCTTACAGTTAGGGTTGGGTCGATGGACGATGCCATTGCCGATGGCTCtgagacatcacaatgctgagccagcatcgaaATCCTCTGCCCTGCCCCCGTTGCAGTAGCATTCTGCttacgaaaaatacacacttcaaagctcgtacacaccgggacgcttttcatttgcgtttatcaTCATCGTTTTACGAGATGTTTTTCGGGAtttaaacccaagcgatttttactggcgtcgagcagaagagtatgtaaaatcactccttgatgttggatggcgctacacaactttaaactTCTGACACcctgcttataacacagaagaagaggaagaaaggAAGTTCagatgcttgttgttaaagtttcTGGTGAATCGAACAAGCATATATGGTTCAAGCTCCAGCTGTAGCGATAAAGAAATGAATATGGTTCACCAGTGTAATAGGCAGCTCCACGTTCATgttgcctctgggcatcttccTCAATGTGAGCTTGCATTGACAGTTTTACActtgagcacctccaagtgctgtttactgtaacttcagcagctctatgcatgtgaacaaaagtgtcaatctgattggtggaggttTTAACgtgagcatgaggcgttttttaaaaatgacgcttttgcgcctgccgttttgcgcgCTGGTATGCACAATCACATTGATGCCCTGTATTTAGTTACGAGgtgttaaacgtcgacggaaaacatctctgtgtgcacgggcctttggttttaaaatggcattttaaaccGAAAATGATCCATGTCCACACTgatgtttcatctagcatttctgaaaagattaccaaggatgtaccgctggatcgtgtctcactatagttgctaaatgtgatattgcattaattttgtctctatctaacgactcttctgtcttttgaatctattagataatgtgtcacagcgtcagtacactgcttcaatctttcactttcacgcttgtaaaacctcagatactgttggctggttcctgttggttttgcaccttttttaccaaccaagtttgttgacgccattataacgactcagatcactctgcctgttcatgccagagtcctgcggaaacAGTGGTAATTTGGgtgtaacttatttttatttatttatgatttaattatgggtaaaacaaagactatgcggttcaggtagttaaaacggtaggctacaaataattaattcgttatgaattaattaattattcataaataattaattcaccaccgCCTACGACTaggatgccatcgtccatcacaatgtttcacattaaacatcgTACAATGCAaaattggttgacatcgcccaaccctacttacagtacactgtaaaacaaaatgatacatttttcagaagtatttttaattttagaaatgtaattattattattttaaactattgatatttttttttagaaatagtgTGCAGCCCTACAAACAAGCACAGCAAATTTGGACCTTTTTTGTTGAAATCAAAATTTGAATCTCAAATCACAAGTTTTACGAGAAGAACTGCAAATAGTTCATAAATATAAGTAATATTTTTCCCCAAATCATACAGCTCTACTTTGAGAGAAGATGAAAAGCATGAATCTGTGATCTGGATCTGGATTGTGATTCATATTGCTAGGATCTTCTATGCATGGTATTATCTTAGGCTGAAGTTTTTAAAGCCTCTGACAATAATGGATGATCTCACTGTTTAAGCATCTTGTAAGAAAAAGCTTCCCCAGTCTTTTAAAATGCAGCCGTATTCAACAAACCCTGGCTTAAAACATTTGATTAAACGTTCCTCGCCACATTTTCCAAAACCAGAAATGAAACCAACAAGACAAAATGACTACAATATTGTAGCTAAAAATCGTTTACAAAGCACAACCAGGAAAAgacacccccacccccccaaacTTCAGATTCATCAAAAGACTCTTTGAGCAGGAAAAAAAAGCAAGAGGTAGTCCTTAAATCAGTAAAAAAAGGGGGCCTCCACTCCCACATGTTTAAATCCAGACGAAATGATGAACTCAGACAAGCCGACACCAGAAACATTCCTTTGCTTTTCTGTGCATCTCCACGCACAATATCAGATCTCACCAAGGCACAGTCAGACTCCTATATTTCCTCATACAAATACATTCCTGAAAGTGGTCAGAGGGACTGGTCCCTCTACAcggaaaaacaagaaaacaaaacttCGACCCTTCTCGACCCCCTGAACTAGATAAGACACGACCTGATCATGCATTACGGGGACCCGGCGGCGATTTGTTGGTAGTATGCATTGCAGAATGCCAATACTGTCTAATGACAGCTGCGATTATAAGCCCTCCAAAAGAGCTTGTTTGTGGTTTCATAACCCAAAATTGTGCAATCCGAGATGTTCCTCTCGACTACAGTCTTTTTTGCAGACTCAGTCCTGGCGACGGCATTTACTCATTCTTGCTGTTTGTTGCtcgacacaaacacacaagttaTGTAAGTAGACTACCGAGTGGCCCATCTGCCATCTGGCTGTAGCTGAGTGCTGGTTTGGAGTTACACAAACGATTCAGTCTATGCAAAGACAGTCAGATTGGGTCAGTCTGACATGGGATATGCACACCCACCCTAAACATCTGCACAGATTCAACACTAATACCAAAGAAAGACATATGGGTGTCTCCGATTAACGGCGCGCTTTCGGATTAACCTCACGCCGATGTGTGGGAAAAGAGACGACAAGACATTTCGGCTTCTTTAGAGCAGTTCAACTCTGGACCTGGTGAAAGTTCAGTATAGGAAGCATCTGTACACCGGCGTCTTAACGTAGCTTATAGTATTGATCAAAACAGATACACATTTTGAGTAATATAATAGTATTAGCTTAGTTGTTAACTATATGGTATGTTTACACAGAACCAGAGAAGACTACTTAGGCTAATGACGGCAAACACCTCTGCGTCCTGCTGGATCTGAACAATAAAAAGCTTGGTACGTCGGTACAACGAGACATGGATCCATTTAGGTATTCATGAGCAGCGCTAGTTCTAAACACTGTTTACCAGGTAGCTTATATAAGTACTGTAAGTATGTTATATACTGTTTGACCTGTGAACGAAGTTGGCCATAAACATGGTATAAATGTAACAGACTGTTTGCAGCTTGATATGCACCAAGTGTCTGTTAAATGTCTGGTTATACAAGAAAACAAGCACCCCAATGAACACAAGCCGTGAGCCGTGGCTAATACATAAGCACCATGGTGACAGGTGTGTGAAACGTCAAATCAAACGCACCGTGATCTTACGTACGATAACTTCACACCGCAGCTTATCCCAGGCAAGGACACTGAGAAATATATTCCCGATACTCAATCCTTAAAGTTACTTCAATTTGATTTGTAGGAAACATGATGATAAGAGTTTCCCCGTGTAATAACTGAATGTAAACAATTGTAGACATCAGCTTGCCCTCTTATGTAAAACCCCCATGAGATCTTTCAGACCTTTTGGTCTAAAATAGCACCGGGAAGGAAATGGAGGGACAAGCAGCAGCCTTTGAGATGTTCCTCACACCAGCTGAGGGCCGAAATATGCAACTATTAATTATTGAAACTCATCTTCATCTCTGGCTTGAGATCACAACATTTTCAATGAGAGAATTGGACTGCAAGAGCCCCTGGGTGCTGGTGCACGGCTTCAGTATAGCTGTGCTTTCACAAACAGATTGCCTCCAGTCTAACGGAAAGACGCAAGGCCCCGGAGACCCTTTCGCTGCAAGATCTATTGAATTGTGTCAACAGATTGTGGggagaaaaatgaaaaatatagatCATACAGATCTTGTTCCTTGTATGTGAACTCTCGGTAGCTACTGgatttcatttgtgtttttttttttttgtctttagaaaAGACGTAAATAGCAGATTTAAACAGTGCTATTTCATGGATTTTAGATGACATGGATTCAGAATTATAGATTTACATGTAAATTGCCCTTATTTTTGTAGTCTAGTGTCTGGTTTTATTCACACAGGCAGCAcagtcttttttgtttgtttgatttttagtcTGAACTGTAAAAGATCATTATTGTTTTTGATACGGATCCAAACTGAATCTGTATCTGGTGTGAAATCAGATCGAGTCTGATTTTTTGATAATGCCTGCGAGTGTGAATAGTCAAAAGCAGTTTTTCTAAGTAGTCTTGGACAACTTCTAAATTAAGAGTGTACAGAGAGTACTGACTAACTATAAACAAATGTAtctaatttaaaaatgatttatgtgCAGTAGGGGTTGAACTAtgctggaattcgataccaaacaatactgaatttttaaaaacgtccatttcccgctaacatttgagcgccgTTGAGCGTGTGCTTAAACagagctgatttgccattgtgtttacatgctcaacagaaatgactgtgattggctgtgaagctCATTAGTTCACCAAACTCTCCGCTGTTTActaagtgtaaccacagatacagggacactggagcattatAAAGCCACAGATCATCAGCGAATCGCTTGTATGTCagtttatagacaaaccagctgatcgacgtgactttgaaacactccagtgtccctctatctgtggttacactcagtaaacagaggtaagttcagtgaactgatgactaGGGCTGCAGGAATGAATCAATTAAATCGataaaaatcgattactaaaaTTGTTGGCAATGAATTTCATAATCGATTCTCTGTGTTTCGCGACACGGtatgtttgattattaaaaaaacactttagttcagcGCGGAGCGAATGCGGCCTCTCGCGCACTCATATAGAGTTCAGCATCACTACAGAATCttacatttagagtttgtaaaacacacaagaaagtctATGGAAGTctaacagttcatttaaatataatttgctgatgtgttttattcatatcagatacacatcGTGAAAGTGACTAAAGTTAAATCTATTCTTCCCTATGTTTACCCACCACTTGCATGCATTTTGGGAGTAACCAATAAATTTAGGGGCTGAATGCGTGTTCTGTTTTTATGAATGAGACAAATGCTCAAAacttcttctttttgttttttttaagcaaacaatcactttattttgaggtgttttttttcagaaaacaacatAATTTCTTATGCAATTTTCTctgtatcttgatttaaaaatgtttagatatttggataaaaaacaggacaaaacaacttagttttttattttgttgttattataacagctcagggtggatttatttttgaataaagggttggaaatgaatgcttttcttgttttttttttttttatccaattcatcgattaattaaaaaaatattaaaatcatcGTTAGGTGACCTActaatgaccttcacggccaatcacagtcatttctctAGAGCACGTGAACAGAATGGCAAATGGGCAGTGGTTACGAATGTGCTCTGTAGCGTTTAAAAGTCAGCAGGAAATGGACTTTTTTAAAACTtcgatcccactttatattaag

Function

GO:

id name namespace
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0016043 cellular component organization biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029964 lncRNA upstream 61243 31875019 ~ 31882377 (+) True XLOC_014147
TCONS_00029963 lncRNA upstream 84080 31800505 ~ 31859540 (+) False XLOC_014146
TCONS_00029726 lncRNA upstream 116428 31824839 ~ 31827192 (+) True XLOC_014146
TCONS_00028173 lncRNA upstream 354970 31587746 ~ 31588650 (+) False XLOC_014142
TCONS_00029962 lncRNA upstream 382396 31556045 ~ 31561224 (+) False XLOC_014142
TCONS_00029968 lncRNA downstream 231 31954959 ~ 31969766 (+) True XLOC_014150
TCONS_00029969 lncRNA downstream 302887 32257615 ~ 32368512 (+) False XLOC_014155
TCONS_00029970 lncRNA downstream 761850 32716578 ~ 32718796 (+) True XLOC_014158
TCONS_00029971 lncRNA downstream 810555 32765283 ~ 32780918 (+) True XLOC_014159
TCONS_00028211 lncRNA downstream 1509981 33464709 ~ 33477475 (+) False XLOC_014167
TCONS_00028182 mRNA upstream 4581 31905002 ~ 31939039 (+) True XLOC_014148
TCONS_00028180 mRNA upstream 4590 31904912 ~ 31939030 (+) False XLOC_014148
TCONS_00028181 mRNA upstream 4672 31904927 ~ 31938948 (+) False XLOC_014148
TCONS_00028179 mRNA upstream 4823 31904836 ~ 31938797 (+) False XLOC_014148
TCONS_00028178 mRNA upstream 48025 31873308 ~ 31895595 (+) False XLOC_014147
TCONS_00028184 mRNA downstream 203282 32158010 ~ 32164532 (+) True XLOC_014152
TCONS_00028185 mRNA downstream 211974 32166702 ~ 32169161 (+) True XLOC_014153
TCONS_00028186 mRNA downstream 247263 32201991 ~ 32206819 (+) True XLOC_014154
TCONS_00028187 mRNA downstream 302744 32257472 ~ 32461596 (+) False XLOC_014155
TCONS_00028188 mRNA downstream 367069 32321797 ~ 32461596 (+) False XLOC_014155
TCONS_00028175 other upstream 352080 31591524 ~ 31591540 (+) True XLOC_014144
TCONS_00028174 other upstream 353129 31587931 ~ 31590491 (+) True XLOC_014142
TCONS_00028165 other upstream 595272 31342023 ~ 31348348 (+) True XLOC_014139
TCONS_00028157 other upstream 1052610 30885312 ~ 30891010 (+) True XLOC_014132
TCONS_00028153 other upstream 1056369 30884984 ~ 30887251 (+) False XLOC_014132
TCONS_00028183 other downstream 103749 32058477 ~ 32058599 (+) True XLOC_014151
TCONS_00028194 other downstream 859592 32814320 ~ 32818574 (+) True XLOC_014160
TCONS_00028217 other downstream 1777434 33732162 ~ 33765725 (+) False XLOC_014168
TCONS_00028221 other downstream 2180879 34135607 ~ 34135695 (+) True XLOC_014171
TCONS_00028225 other downstream 2252434 34207162 ~ 34207280 (+) True XLOC_014173

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU264427 True 4935 lncRNA 0.38 1 CI01000054 7508766 ~ 7513700 (+)