CI01180000_00263000_00297934 (MERTK)


Basic Information

Item Value
gene id CI01180000_00263000_00297934
gene name MERTK
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 263000 ~ 298466 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_00263000_00297934.mRNA
GCTTCCAGTTGGAAACATCCTCTCGCTGTCGTCCACCATGGAGGTTCACCTCATTGGATGAGACAGGGCCGTTCTTTCCGTCCAACGCAGGCTTCAGAACCGCTGATTGCCCCGGCACGAGCCTCCAGTGTACACCTCTCACAGGAGGAGATCAAGAAGCTGCGCTTCAAACCCACAGTGGGCACAATCCAGCGGTCAGAGGGGACAGAGGTCACATTTAACTGCTCCATAGACATCAATGATGTGAGCCAGGCTCAGGACCTGAACATTCTGTGGTATAGGAATGGTAAGGAAATCCCTGATGGCATGCAGACGCACATCAACATACATCGGACTTCCATGTTGCTGTCCAGTATAAGCATTAAAAGTGTCCAGAGAGCAGATGCTGGAGAATATCACTGCAGGCTTAGTGTCAGTAACAAGATCATTGAGTCAAATCCCATCATTTTAGAGGTGGAAGGCTTGCCGACCTTCACTGTACACCCGAGCGACGTGAACATCACGAGAAACACTTCCTTCAGGTTGACCTGTGAGGCGGTCGGTCCCCCGAACCCTGTAACTATTAAGTGGCTTCGAAAAGGCGAGAGTTACGAAGAAGGCACCGAGTCTTCCAGCACCATCACTGTTGAAGGTGTTGATGCTCCCACACAGTTCAGCTGTGAAGCTCACAACGAGAAGGGCCTCACAGTGTCCAGAGAAGCTCACATCAATATCAAAGAGCTTCCTGACAAAGTGTCAAAGGTCACAGTAGTAAAACGCGAGGCCAACAAACTCCTCTTGAGCTGGACTCCAGGACAGGATGGCTTCTCTCCTCTCAGCACATGCTACATCACGGTTCGAGAACTCGGCCGTGAGCCGGGAAGTCCTACTGCCGTACACAAGACACAAGTGCCTCCGTTCCAGTATGAAATCAGCAACCTCAAAGCCATGACCTGGTACAACATGAGTGTGTCCTGCACCAATGAGATCGGGTCGTCACCGCCCAGCACTTGGGTCCAGAGCAACACCACAGAGGGCGTTCCATTGGAGGCCCCCCAAAACTTGACTGTTCATGTGAACAATTCCATGTTGATGATCCGATGGGAAGCTCCGCCCCCTGACAAGTTGAATGGAATCTTGCAAAGATATGAGGTCACTATTAAACACGGGACACGTACAAACAAGATTCACAGTATCACCACAGAGGCCGCAGTGACCCTGCAGGTGTTCAACACCACATACAGTGTTGAGGTCGTGGCCTGCACGCAGAGCGGCTGTGGGACCCAAAGGTCGCGCCACTGGCTCTTTATACCAGACGCTGAATCGCTCGAATCTCCATCCTCGACGCCAGTTTCCAATCGTTCCGACTCTGTGTACATTGTGCTTGGAGTGGTTTGCGGGTTCTGTCTGTTGATGATAGTGTTGTTTGGCATGGTGTGGTTGCGCAGTCACACTTTTTTGCGATGCCTTTTCATTCTAAGACCATATCTGAAAAACAACGGCTATTTTAGGGACCAGAGTATGTTCATCTTAATGTACTTGGGACAAGAAATTGAAGGCTTCAGGAAAGAAAGGTGTTTGTTTGGTGCTGATGACAAAATCACTCCTAAAGTCGAGTTCAGACCTCAGAGATCCTACAACCGCTCAGCCATTGAAATCACAGTTGCCAGTCTGGGCATTAGCAGTGAGCTTCAGGCCAAACTCCAGGACGTGATGATCTTAAGGAACCTGCTGTCCATCGGTAAAGTCCTCGGAGAAGGTGAGTTTGGATCTGTGATGGAGGGATATCTCAGACAGCCTGATGGAGCCTCTGAAAAAGTTGCTGTAAAGACCATGAAAGTGGATAACTTCTCCCAGAGAGAGATTGAAGAGTTTCTGAATGAAGCTGCTTGCATGAAGGATTTTAACCATCCTAACGTCATCAGACTCTTGGGTGTTTGTTTAGAAGTGGGCTCGGGACACTTTCCTAAACCAATGGTCGTGCTCCCCTTCATGAAGTACGGAGACTTGCATAGTTTCCTCCTTCGCTCACGTCTCGGGGAAGATCCTGTGTTTCTCCCTACACAGATGCTCCTGAAGTTCATGATTGACATCGCTCTGGGAATGGAGTATCTCAGCAACAGAAACTTCCTACACCGGGACCTGGCAGCACGCAACTGCAGGTTGCGTGACGACTTGAGCGTGTGTGTTGCTGATTTTGGCCTGTCGAAGAAAATCTACAGCGGTGACTATTACAGACAGGGCCGGATAGCCAAGATGCCAGTCAAATGGATCGCAGTCGAAAGCCTCGCTGACCGAGTCTTCACAGTGAAAAGTGATGTGTGGGCATTTGGAGTGACCATGTGGGAAATAGCCACTCGAGGCATGACCCCATACCCTGGAGTACAAAACCATGAGATTTACGATTATCTCCTTGATGGAAACCGACTGAAACAACCGAACGACTGTCTTGATGAACGGTACGATATCATGTTCAGCTGCTGGAGCGCAGATCCGGTGGACCGACCCGACTTCACACAGGTTAGGAAGAGGCTGGAGAATCTGGCAGGGAAACTTCCCGCGGTGTCCAACAGGAGGGACATCATCTACATCAACACCAGCTTCCCTGAGGAGGAAGATGATTTACCCGGCTTGGCGGCGGAGGGCCCTGTGCTGACATCCTCACCCTCCTGCAGTCACCAAACCACAGACACGTCAGTAGTGACGGCGGACATTCACGAGAGCACAGACGCAGAGGACGACCGTTACGTAGTTGTCATATCCTCTGGGGACCATGGGGCGAGAACTGCTGTTGATACGCCATTATTAAGTCACGGACTCTTGGAACAGGACTGTGGCGAAACAGTCAGGGACGTGACGGAGACGCAGCAAACATCTAGTGACATGACACGTTTGCTCTGACGGAGAATTGCATGATGGGAATTTAACCATATACACTTATGGTCAGACAAACAGTGCCAAACTCACACCATTGTTTGAGTTAATGTCATTGTGATGGGCCTGATGGGAGGCTCAAACATACAGATCAATGTTTTGAAAGCACCACAGAGACGCTGTTACACTTTACAGAGGAATCAACACATGAATGCTTTAATTATAGTCTTTATTAGTGCTGTCAAACGATTAATCGCATCCAAAATAAGTTTGTTTATATAATATATATGTGTGTGTGTATGGTGTATATTTATTATGTATATATTTAACAAAAATATATTATATTAAAACATTTATATTTATATATAATATAAATTATATACAAATAAACATGTAAATATTTCTTATGTGCATGTATTTGTGTGCGTACACACACATATTATATAAACAAACTTTTATTTTGGATGCGATTAATCGTTTGACAGCACTAGTATTAAGCGGAGTTACAAGAAAATATTTTGACTTCAAAAAAGTTACACACATCACAGCAAAGTATGC

Function

symbol description
mertk Predicted to enable transmembrane receptor protein tyrosine kinase activity. Involved in negative regulation of leukocyte apoptotic process; phagocytosis; and positive regulation of phagocytosis. Located in cytoplasm; extracellular space; and rhabdomere. Implicated in retinitis pigmentosa 38.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_00263000_00297934.mRNA True 3411 mRNA 0.47 19 263000 298466

Neighbor

gene id symbol gene type direction distance location
CI01180000_00250154_00256723 LHCGR coding upstream 4332 250154 ~ 258668 (+)
CI01180000_00105493_00124081 NA coding upstream 138917 105382 ~ 124083 (+)
CI01180000_00009241_00055691 ANAPC1 coding upstream 207050 9241 ~ 55950 (+)
CI01180000_00306160_00314770 NA coding downstream 7694 306160 ~ 315744 (+)
CI01180000_00361420_00364335 NA coding downstream 62954 361420 ~ 365126 (+)
CI01180000_00368639_00375465 ZC3H6 coding downstream 70173 368639 ~ 376247 (+)
CI01180000_00427700_00437883 NA coding downstream 129184 427650 ~ 438466 (+)
CI01180000_00661446_00671602 MSH6 coding downstream 362643 661109 ~ 672188 (+)
G678501 NA non-coding upstream 12087 250685 ~ 250913 (+)
G678499 NA non-coding upstream 19289 243506 ~ 243711 (+)
G678493 NA non-coding upstream 27798 233616 ~ 235202 (+)
G678490 NA non-coding upstream 35268 226492 ~ 227732 (+)
G678488 NA non-coding upstream 39554 220048 ~ 223446 (+)
G678448 NA non-coding downstream 705 299171 ~ 301328 (+)
G678508 NA non-coding downstream 24283 322749 ~ 326978 (+)
G678521 NA non-coding downstream 53491 351957 ~ 444582 (+)
G678444 NA non-coding downstream 89375 387841 ~ 390386 (+)
G678554 NA non-coding downstream 136267 434733 ~ 487143 (+)
G678440 NA other upstream 111348 147934 ~ 151652 (+)
G678751 NA other downstream 761377 1059843 ~ 1066091 (+)
G678637 NA other downstream 851085 1149551 ~ 1155672 (+)
G678946 NA other downstream 1219887 1518353 ~ 1612547 (+)
G679076 NA other downstream 1496704 1795170 ~ 1799433 (+)
G679324 NA other downstream 2090401 2388867 ~ 2397360 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location