G679324


Basic Information

Item Value
gene id G679324
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2388867 ~ 2397360 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU800043
CTGGTAACGAGGCAGCAGTCGTGAATGATGCTGTCTTCCACATACAGGCCTCTCTCCTCCAGCGTATGGACGGGATGCTGTTCATGGCTCCAGGAGAGTCTGACAGAAGGGTCGAGGTACGAGGCGGTGCACTGCAGGGGCAAACGGTCCCCCCGGAACACCAGCTGCCTCTGGGTGGGAATGAGCTGCAGGACGGGCAGCTCCAGCGGTCCATCACAGGTGAGCTGGTGTTCCTGAAGGCTGCGGAGCTCCAGTCCATGAAGACGGCTCGGATACACACATACGGATTCATTGCCCACACGCACAGACTGAATCCTGACCCACGACAACAACCAGCGCAGCTGACAATCACAGAACAGATAGTCTGTGCCCATGCTCAGCACTCTGAGGGAAGGCACGTGTGTGAAAAGCCCCTCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU800043 True 418 TUCP 0.59 3 2388867 2397360

Neighbor

gene id symbol gene type direction distance location
CI01180000_02362001_02362428 NA coding upstream 25337 2361960 ~ 2363530 (+)
CI01180000_02322594_02323609 NA coding upstream 65115 2320352 ~ 2323752 (+)
CI01180000_02158036_02158965 HS3ST1L1 coding upstream 229645 2157350 ~ 2159222 (+)
CI01180000_01942458_01949580 NA coding upstream 438220 1942127 ~ 1950647 (+)
CI01180000_01915282_01926129 NA coding upstream 462598 1914892 ~ 1926269 (+)
CI01180000_02541296_02567509 CFAP46 coding downstream 143936 2541296 ~ 2567783 (+)
CI01180000_02574027_02588521 NA coding downstream 176667 2574027 ~ 2588824 (+)
CI01180000_02613130_02639905 NA coding downstream 214918 2612278 ~ 2639922 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding downstream 291911 2689271 ~ 2693221 (+)
CI01180000_02951792_02968343 STK32C coding downstream 554432 2951792 ~ 2968343 (+)
G679047 NA non-coding upstream 146994 2238490 ~ 2241873 (+)
G679218 NA non-coding upstream 173933 2210789 ~ 2214934 (+)
G679228 NA non-coding upstream 187432 2197189 ~ 2201435 (+)
G679050 NA non-coding upstream 260880 2121269 ~ 2127987 (+)
G679204 NA non-coding upstream 282774 2099698 ~ 2106093 (+)
G679346 NA non-coding downstream 44915 2442275 ~ 2442571 (+)
G680148 NA non-coding downstream 175052 2572412 ~ 2572739 (+)
G680180 NA non-coding downstream 238415 2635775 ~ 2664245 (+)
G680204 NA non-coding downstream 285874 2683234 ~ 2683580 (+)
G679076 NA other upstream 589434 1795170 ~ 1799433 (+)
G678946 NA other upstream 832716 1518353 ~ 1612547 (+)
G678637 NA other upstream 1233195 1149551 ~ 1155672 (+)
G678751 NA other upstream 1322776 1059843 ~ 1066091 (+)
G678440 NA other upstream 2237215 147934 ~ 151652 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1155917 3569165 ~ 3573135 (+)
G680736 NA other downstream 1368331 3765691 ~ 3784441 (+)
G681137 NA other downstream 2385945 4783305 ~ 4785631 (+)
G681268 NA other downstream 2973050 5370410 ~ 5373762 (+)

Expression


Co-expression Network