CI01180000_02322594_02323609


Basic Information

Item Value
gene id CI01180000_02322594_02323609
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2320352 ~ 2323752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_02322594_02323609.mRNA
CCTATAAAAACACATGATATATAAATCACATCATAAGATGTTTAAAGGCTGCTAGAATCCCAGATAAGATTAGTGCAATTCACCAGCAGTGACTGGCATTGATTTAGATCAACTGTACAGAAATAAAGCACAAAAATCTTTTTCATTTAACAAGATGAAATCCCTCAAGAATGAGAACATTTACTCTGTTCATGGAGAACTGGCACTGGAACATCAGTGATCTACACTAGAACATCTGCAGCTCTCGAGCTGTTGTGATGAAACAGAGCAACAGGTTCAGAAACCCAATTCCAGCAGGAAGCACCGGCAATTTACCACGATACTCGCGTTCATAAAGAGGTTGGGATATAAATATGTGTCGCAAACGGTTTGAAAGCCTCTTTTTCTCAGACACTGCGGACTGCGGGTGTGGTGACTGCATCAGCTCTCTCTCTCTCACACACACACACACACACACACACACACACGCTTTCTTTCACAAGCTCGCATGCACAGCACAGCTAAACAATAAACAACATTTAAACGGCAATGCAACAATTTCACCTTTAAAGCGTGAAGTTTAAAGCATCACAAGAACAGCTGCACTTTCATTTAGTAGTGAAGCACGAAAATCACTTTCGTCTTCACGCGCACAAACACCCACTATCTCATCTTCACGCACGAGTCAAGTGAATCCGGATTAAAGTCGTCTAATGCAAAACATCTGAACACTTCGATTGTCCACGCACACCTTCAAACACGCATCTTATCATCATCACTCACTGTTTCCCTGAGCATCGCACTTATTACAGCGCAATTCGATTAAACAGAAGCATTCACGTCATATTTCGAATCATAAACCGCTCTCGTTCACCGGACTGACCTCCCAGTCGATGGAGTCCCACTCGTCGGTGAACATTCGGCGGCTGTGAGCTCGCGCGCTCGGCGCCACTACGGACGACCAGATGCCATTGCGCTGTGAAAATCCTCGTCAAATCACTTCCACGCGGTGATATTCCCACGTATCCCGAGCATGAGTCCGAGTGGAGACCGATAGAGTCATGAAGACGGAGCCGCTACGATGCTGCTCAATGAGCTGCGCGTAAAAGCGCCGCGCTGCCGAAACCCGCTTCGCCATGAAGAATGAAGGGGGCGAACAAGTGCCCTCACACACTCACTAATTAGTCATTTACCAAAACCACATACAGCCCACTTATTACAGGTTCAGTCCTAGTCAGCTGGTTCAAACCTACAACCTCTCAGTCACCGCTAAGCGTTTACAACAACAACAGTTACTGCATTTCACACGAGCAGGCAAATCCAGCAATGTGCCTTTAAGTAAAACTTGTTGTATAAGGGTTTTCTGCGCTCCTTCCCTAGTCGAATGAATCCTCGCGGATTTCTATTGGTATTTCTATTATAATTGGAAGCAATCCAAATGGGATAAATCACAAATCCTTTAAGAATCAAATAAGATCCGACTGGATAGACTGCAACTCATTTTTTTTTTTTTTCAGAAGTGATTTCAGTTTATCCAGAAGGATCTTATTTGACTCTTGCAGCGCCTTTACTCAGCTGCTCTGCTCCACATTCAGAGTAAAGACCCAATGCAGCATAAAAGCAGGAATAAAACACGCAGCTCTGACGCACCTGAGGCGGCTCTGATGCTGCTTTACTCCTGTGTCAAATGATGACGCATCAGAGCCGCCTTAAACTTTATTTACTTTTTTTATTTTTAATATTTATTTTGCACAGTTTCATGTTTTTAGATCCATATTTTAGTATTTAAAAATGTTATTTGTGCACTTTTAATTTCTGGGCAAATGCAGAATTAATTTACACAGTATATATGACGCTTCTTTGCAGTGTAAAGATGATTCTTGTTTGGTTGCATTTGCTTCCATATTTTAATAGGAATACCAAAAGCAATCCAGCACACATTTTGTGATTTTTTGACTGAAGTGCTTTGTTTGCTATACTCAAACTCAATGCATCCATTATCTACATGCAAAGCTGCTTTGAAACTACTTGCAAGCGCTATACAAATACACGTGAACTGAATTGAATTCTTGTTTGCACCTCATGTCCTTCGCACTGGCCATACCTCATTATCACGTGCACATATCACCATTTGCCCTTGCATCAATAATATTTACACTTCTGTTTGGATGCGTTTCATTGGCTCTGCGCCTCCACAATAGCAATACTCCAATGACTTTGACGACTCTTACCATGAGCACGGCGAGGTTGTTGTGGTGCGCGCAATGGATGGTGGTCGTGTTGTGCGTGGAGCCCGTTATCTGGCAGCCTTCCGCCCGCCAGCCGCCGTGTCCATTCAGCAGGTCAAAATCCCAATATGCTGCGGTGGGGTCTACACCCAACGAGAAGTGCCGGAGAGCGACGGTAACCGGCTGCACGGGGCTCCCGGGGCTACACCCATCTACACAGGAGAGCAACACATTGCGTCAGAGGGGGAAATGATTCTGACCAGCACAGCTCACTACAATATCAGCACCAGACAGCTTAAAGCAGCAGGCTGATAAAACAGCAAATAACCAGAGGGGTTATCATCATCATCATCATCATCCTAAGAGCTTCACCTCTTTATCTGTGTTAGAATAGCGGGAAATGTGTCAATGTCTAATGCAGACCCTGTGGAAGAAAAGCATGTTATTTTGGCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_02322594_02323609.mRNA True 2661 mRNA 0.44 2 2320352 2323752

Neighbor

gene id symbol gene type direction distance location
CI01180000_02158036_02158965 HS3ST1L1 coding upstream 161130 2157350 ~ 2159222 (+)
CI01180000_01942458_01949580 NA coding upstream 369705 1942127 ~ 1950647 (+)
CI01180000_01915282_01926129 NA coding upstream 394083 1914892 ~ 1926269 (+)
CI01180000_01865632_01870994 NA coding upstream 449263 1865509 ~ 1871089 (+)
CI01180000_01832263_01834405 COX5B.2, COX5B2, COX5B coding upstream 485353 1832013 ~ 1834999 (+)
CI01180000_02362001_02362428 NA coding downstream 38208 2361960 ~ 2363530 (+)
CI01180000_02541296_02567509 CFAP46 coding downstream 217544 2541296 ~ 2567783 (+)
CI01180000_02574027_02588521 NA coding downstream 250275 2574027 ~ 2588824 (+)
CI01180000_02613130_02639905 NA coding downstream 288526 2612278 ~ 2639922 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 coding downstream 365519 2689271 ~ 2693221 (+)
G679047 NA non-coding upstream 78479 2238490 ~ 2241873 (+)
G679218 NA non-coding upstream 105418 2210789 ~ 2214934 (+)
G679228 NA non-coding upstream 118917 2197189 ~ 2201435 (+)
G679050 NA non-coding upstream 192365 2121269 ~ 2127987 (+)
G679204 NA non-coding upstream 214259 2099698 ~ 2106093 (+)
G679346 NA non-coding downstream 118523 2442275 ~ 2442571 (+)
G680148 NA non-coding downstream 248660 2572412 ~ 2572739 (+)
G680180 NA non-coding downstream 312023 2635775 ~ 2664245 (+)
G680204 NA non-coding downstream 359482 2683234 ~ 2683580 (+)
G679076 NA other upstream 520919 1795170 ~ 1799433 (+)
G678946 NA other upstream 764201 1518353 ~ 1612547 (+)
G678637 NA other upstream 1164680 1149551 ~ 1155672 (+)
G678751 NA other upstream 1254261 1059843 ~ 1066091 (+)
G678440 NA other upstream 2168700 147934 ~ 151652 (+)
G679324 NA other downstream 65115 2388867 ~ 2397360 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1229525 3569165 ~ 3573135 (+)
G680736 NA other downstream 1441939 3765691 ~ 3784441 (+)
G681137 NA other downstream 2459553 4783305 ~ 4785631 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G95598 adgra1,LOC107689349,LOC107567015,LOC107570923,LOC107750141,LOC107663568 unknown NC_056711.1 CM032080.1 21178852 ~ 21180678 (+)