Gene
RNA
| Item | Value |
|---|---|
| gene id | G678946 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 1518353 ~ 1612547 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU799629 | False | 573 | lncRNA | 0.53 | 5 | 1518353 | 1612547 |
| TU799630 | True | 419 | TUCP | 0.49 | 3 | 1518353 | 1556151 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01180000_01492241_01493781 | NA | coding | upstream | 23907 | 1491671 ~ 1494446 (+) |
| CI01180000_01380859_01385445 | NA | coding | upstream | 132570 | 1380701 ~ 1385783 (+) |
| CI01180000_01372608_01374455 | NA | coding | upstream | 143806 | 1370761 ~ 1374547 (+) |
| CI01180000_01196818_01224406 | EGLN1B, EGLN1, EGLN1A | coding | upstream | 293438 | 1196786 ~ 1224915 (+) |
| CI01180000_00955725_01050852 | SIPA1L2 | coding | upstream | 466527 | 954922 ~ 1051826 (+) |
| CI01180000_01747067_01755038 | GPR137B | coding | downstream | 134520 | 1747067 ~ 1755257 (+) |
| CI01180000_01828938_01830221 | DNAJC12 | coding | downstream | 216391 | 1828938 ~ 1830814 (+) |
| CI01180000_01832263_01834405 | COX5B.2, COX5B2, COX5B | coding | downstream | 219466 | 1832013 ~ 1834999 (+) |
| CI01180000_01865632_01870994 | NA | coding | downstream | 252962 | 1865509 ~ 1871089 (+) |
| CI01180000_01915282_01926129 | NA | coding | downstream | 302345 | 1914892 ~ 1926269 (+) |
| G678869 | NA | non-coding | upstream | 85490 | 1431965 ~ 1432863 (+) |
| G678929 | NA | non-coding | upstream | 86612 | 1431505 ~ 1431741 (+) |
| G678868 | NA | non-coding | upstream | 87386 | 1429873 ~ 1430967 (+) |
| G678928 | NA | non-coding | upstream | 90014 | 1428052 ~ 1428339 (+) |
| G678891 | NA | non-coding | upstream | 160761 | 1349918 ~ 1357592 (+) |
| G678945 | NA | non-coding | downstream | 93968 | 1706515 ~ 1707619 (+) |
| G678942 | NA | non-coding | downstream | 114614 | 1727161 ~ 1733717 (+) |
| G679064 | NA | non-coding | downstream | 122870 | 1735417 ~ 1735761 (+) |
| G679069 | NA | non-coding | downstream | 152763 | 1765310 ~ 1765538 (+) |
| G679052 | NA | non-coding | downstream | 164163 | 1776710 ~ 1777125 (+) |
| G678637 | NA | other | upstream | 362681 | 1149551 ~ 1155672 (+) |
| G678751 | NA | other | upstream | 452262 | 1059843 ~ 1066091 (+) |
| G678440 | NA | other | upstream | 1366701 | 147934 ~ 151652 (+) |
| G679076 | NA | other | downstream | 182623 | 1795170 ~ 1799433 (+) |
| G679324 | NA | other | downstream | 776320 | 2388867 ~ 2397360 (+) |
| CI01180000_02690045_02691641 | NKX6-2, NKX6-2.L, NKX6.2 | other | downstream | 1077215 | 2689271 ~ 2693221 (+) |
| CI01180000_03571292_03571611 | GNG2.L, GBG2, GNG2 | other | downstream | 1940730 | 3569165 ~ 3573135 (+) |
| G680736 | NA | other | downstream | 2153144 | 3765691 ~ 3784441 (+) |
| CI01180000_01576739_01578505 | GNG4 | coding | downstream | 20588 | 1576739 ~ 1579406 (+) |
| G678948 | NA | non-coding | downstream | 35021 | 1591172 ~ 1593047 (+) |
