G678868


Basic Information

Item Value
gene id G678868
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1429873 ~ 1430967 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799546
TTTATTTCAAAGGCTTTTCTGCTTACATTTGTACAATAAATTACACACTGTCCATCTTCTGATGAGCTTAATAAATATGATAGAACTTTCCGTTAAGCTTTGTCACTTTCTCTCTCTTTCTCGCGTTACAAACAGTCTGAACATTTTTGTAAAGATCCATAAAACTTTACATTTCATGTACAGATTGGAAAATACCACATTATAAAAAAAAAATAAAAAGCCAAGTACAAGCACAGTTGAACAGAAACGCACAGACAAGAAGGAAACGGAAAAGTGAGAAACTGAATCGTAACAAACTCCTACCGAAGTGAAAGAACGAAAAAGAAAATGGACATGCTTTTACCTTCCGAACGCACACAGACGCTACAGTTAAAACAGTAAAACTGTACAGAAAACGTACATGGTATTAACAGTGCAAGATATTAAATAGCTCGACTCAAAACACACTTCTCAATATACAAATGTATAACAAAGGCATACAATTACATACAAGTGCTAAACGGTACAGTCCTTCAGGTTATGATACAACAGGGAGTCTATACAAAGGAAAGATGTCTTCAGCATTGTACACACACACACATGACTTCTCGGTATAAACGCACGTCTTCACCGTCGTAACCCTTTGCCTGGTCAGATGAAGGATGCAGGATGAAAGCACAAATGTTTTGAGAAGTAAAGAGAGCGACGCGCCACCTTTAAACCGAGTCAGTGATGATGATCAGACTACAGATGAAGTCAAATGATGATGTTCCTTGGTTCTCCTTATACTTCACCCAGAAATGAACATTCACTCATCCTCAGGTTATTTTCCCGTGCATCACATGACAAATGTGCTTCTGAATCACATAGATCTGTGTGTGGAACAAGACTGAAATTAATGTCATATGGACGACTATTATTGGTGCTTTTGGAGATGAACTGCTGTTGTATGAAAAAGAAACGTCTGCTTTTGTGTTGCACAGGAAAATAACATCAAATGAGTTTGGAACGACATGAACAGACTTTCATTTTTATTTTCATTTTATCGCTTTAAAGGATTAGTTCACTTCAGAATTTAAATTCAGATTTACTCACACCCATGTCATCCAAGATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799546 True 1095 lncRNA 0.37 1 1429873 1430967

Neighbor

gene id symbol gene type direction distance location
CI01180000_01380859_01385445 NA coding upstream 44090 1380701 ~ 1385783 (+)
CI01180000_01372608_01374455 NA coding upstream 55326 1370761 ~ 1374547 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding upstream 204958 1196786 ~ 1224915 (+)
CI01180000_00955725_01050852 SIPA1L2 coding upstream 378047 954922 ~ 1051826 (+)
CI01180000_00947514_00949868 NA coding upstream 478967 946421 ~ 950906 (+)
CI01180000_01492241_01493781 NA coding downstream 60704 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 111092 1542059 ~ 1546080 (+)
CI01180000_01576739_01578505 GNG4 coding downstream 145772 1576739 ~ 1579406 (+)
CI01180000_01747067_01755038 GPR137B coding downstream 316100 1747067 ~ 1755257 (+)
CI01180000_01828938_01830221 DNAJC12 coding downstream 397971 1828938 ~ 1830814 (+)
G678928 NA non-coding upstream 1534 1428052 ~ 1428339 (+)
G678891 NA non-coding upstream 72281 1349918 ~ 1357592 (+)
G678838 NA non-coding upstream 111619 1259352 ~ 1318254 (+)
G678832 NA non-coding upstream 126044 1250996 ~ 1303829 (+)
G678929 NA non-coding downstream 538 1431505 ~ 1431741 (+)
G678869 NA non-coding downstream 998 1431965 ~ 1432863 (+)
G678946 NA non-coding downstream 87386 1518353 ~ 1612547 (+)
G678948 NA non-coding downstream 160205 1591172 ~ 1593047 (+)
G678945 NA non-coding downstream 275548 1706515 ~ 1707619 (+)
G678637 NA other upstream 274201 1149551 ~ 1155672 (+)
G678751 NA other upstream 363782 1059843 ~ 1066091 (+)
G678440 NA other upstream 1278221 147934 ~ 151652 (+)
G679076 NA other downstream 364203 1795170 ~ 1799433 (+)
G679324 NA other downstream 957900 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1258795 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 2122310 3569165 ~ 3573135 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G196124 NA non-coding NC_053130.1 CM020927.1 23258136 ~ 23261055 (+)
bowfin (Amia calva) G158857 NA non-coding CM030143.1 CM030143.1 8302550 ~ 8304840 (+)