G678948


Basic Information

Item Value
gene id G678948
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1591172 ~ 1593047 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799634
ATTTTATTACATATTTCATAAATACAAAATTTTTTTAGAAATGTCCCAGCCAGGCCTTGGTGAACATATCAATCTTAAATTACATAAACCACTGTTAATTCAACAATAAGCCTTTTCGTGATACAAATTCACACATCTTGCTTCACAAACAGTAACATCAATCTCTTTCTGAGGGAATTGCAAACATGACAATACTGTGCACAATAATTAAGAGATATACGTATGTAATGCAAGCATGGAAAACAGATTCAATACATGAACATTCAAATAAACATAAAACAACCACATAACTTAGGAGGGCTCTGTAAACACCAGATGATTCTCCTTAAACTAGTTGACAAAACACCTTCCAGTGAAGTGCTGGCGTTCTCTGGATTTGCATTGACGGTGAATAACTTCTTTCAAACTCTGCGATACATGTGTTTGATGTTTCTGAAAATAATGCAAAACAAAGCTGTAGTGGGGAAAAAGGTGAAAGCATTCCCTTTCTGGTAAACACTAAAATGTAAGACAAGCTAATTATATTAGTTGCAATGTAAGACTCATACAAAGGAGAAAATAACAAACACATAAAGGCAAATAACGCTCTGGATCACGTTTAGATAACGAACGCTCGTTTCCTCCACATTTAAGGCTGGCCGACACTTAAGACTTCAAGAGCATGGGATTCCTGCGAAACTGTGAATGTACGTACAGGAGATTATAATAGCTTTGCATTTGTACAGTAATCAGGATGTTTTTATTGCAACCAAAAGAATTCCAAATTGTAAAAAAAATCATCCATGAATTAGTCAGGATGGTCCTAAAGGTAGATTTGACTAAACTTTCAATTGTTTCTCCGATGTTAGATAATGCTTGAGTGATCACAACATGCAAAACATCTAATTTGTCACACAACTGAATATAGAACAGAAGGAAAGCGAATTTGATGCACTTATTCACTGGAAACTGGGCCGTTTGGGTTGAGTTGGTGGAATAAAAACAATAAATATTTGCACGGTTTTGACGCACGACCACCTTCGACATTCACTGCACATCGTCATAGGAAGTGCATCTTATAATGAAGAACAAGAAACAGACGTTTAGATGTGGCTTTCATCCTTGTTTGAGAATAAATATATCAATGAGAAGTTTAACGTGGTTTAACAAGGCATTGCATGCACACATTCATTCTGCCGCCGCACGTCACTCATGCGAGGGTCTGACACGCGAGCATGCCTGCGAAAATATCCTGCATGGATTACGAATGCAGACGGTAGTGTTCGGATTATTTCAGTCTGAAAAAGCACGATTTCTAGTCTCAGGACATAACGAAGGAAGGAGAAACAGGCCTTCAAATGTTTAGTCTGGGCGGACCAGACTGTAGCAGCTTTCAAAATCAAACATCATGAAATCACAAACAAACCAGTCAAATGAAACACAAAACAAACAAAGATAACGAAAAGAAATGATAGGGGGAAAAGGCCTGCGTTCGCTCTGCCTCACGACCCCCGAGATCTGCACGCGACATCCGTTCTTTATGATACAGTAACTTGTAGCACAGCATAAAGTGCCGTGCATTACCATGACGTATCAGGGGGCGGATACTGTGATGGTCATGGGCGGGGCTTTGTGCATGCTGGCTCCTCCTCTTCCTGGGTCAGCGGGGTCGCTCACAGCGTCCGTTCTGTGCGGGTAACGAGGCCGCGTCAGCGCGGGAATCAGCCTGCAGCGTAGCTGCTGAGAAAAGAGTAAAACATGGGCAGCTTCATGCGCTGCTGGTCTCGTCGACACCACGCGATCACGGTGCCCTCGCTGTTGGCCGTGTACAGGTGGTGTCCGTCACACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799634 True 1830 lncRNA 0.42 3 1591172 1593047

Neighbor

gene id symbol gene type direction distance location
CI01180000_01576739_01578505 GNG4 coding upstream 11766 1576739 ~ 1579406 (+)
CI01180000_01542059_01545609 GGPS1 coding upstream 45092 1542059 ~ 1546080 (+)
CI01180000_01492241_01493781 NA coding upstream 96726 1491671 ~ 1494446 (+)
CI01180000_01380859_01385445 NA coding upstream 205389 1380701 ~ 1385783 (+)
CI01180000_01372608_01374455 NA coding upstream 216625 1370761 ~ 1374547 (+)
CI01180000_01747067_01755038 GPR137B coding downstream 154020 1747067 ~ 1755257 (+)
CI01180000_01828938_01830221 DNAJC12 coding downstream 235891 1828938 ~ 1830814 (+)
CI01180000_01832263_01834405 COX5B.2, COX5B2, COX5B coding downstream 238966 1832013 ~ 1834999 (+)
CI01180000_01865632_01870994 NA coding downstream 272462 1865509 ~ 1871089 (+)
CI01180000_01915282_01926129 NA coding downstream 321845 1914892 ~ 1926269 (+)
G678869 NA non-coding upstream 158309 1431965 ~ 1432863 (+)
G678929 NA non-coding upstream 159431 1431505 ~ 1431741 (+)
G678868 NA non-coding upstream 160205 1429873 ~ 1430967 (+)
G678928 NA non-coding upstream 162833 1428052 ~ 1428339 (+)
G678891 NA non-coding upstream 233580 1349918 ~ 1357592 (+)
G678945 NA non-coding downstream 113468 1706515 ~ 1707619 (+)
G678942 NA non-coding downstream 134114 1727161 ~ 1733717 (+)
G679064 NA non-coding downstream 142370 1735417 ~ 1735761 (+)
G679069 NA non-coding downstream 172263 1765310 ~ 1765538 (+)
G679052 NA non-coding downstream 183663 1776710 ~ 1777125 (+)
G678946 NA other upstream 35021 1518353 ~ 1612547 (+)
G678637 NA other upstream 435500 1149551 ~ 1155672 (+)
G678751 NA other upstream 525081 1059843 ~ 1066091 (+)
G678440 NA other upstream 1439520 147934 ~ 151652 (+)
G679076 NA other downstream 202123 1795170 ~ 1799433 (+)
G679324 NA other downstream 795820 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1096715 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1960230 3569165 ~ 3573135 (+)
G680736 NA other downstream 2172644 3765691 ~ 3784441 (+)

Expression


Co-expression Network