G678942


Basic Information

Item Value
gene id G678942
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1727161 ~ 1733717 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799620
ATTTTTGGAGCTGGAGACATGGTCAATATGATCTAATTGTATAGAAAAGAATAGCATGAAGCTTCATCATAATGTCTGCTTTTTGGAACATCAAAGAGAGTAAATGATGACAATATTTATGGTGAAGTGTCCTTATAAGACCAACACAAACAGCAACCGAACTTACTCAGCTAAGTTCTTGACCGATGCCTCTGTGTCATCTGTGATGCGATAGTACGGTCCTTGCTTCTTAGTTAAGAGTAAGAATGTCTCCTGTCCTTTACTGAAGCCGGCGTGCATCGTGTAGCCGCTGCCTGTGCTCTGGAACTGCATCGCCTCTCTCGGGTAGAGGAGTATCGCATAGGACATTGTTTCCACTGAAGCAATGACCAGTTGAAACGTATTCCGTCTTCCGTTGTGTTCCAGACCATCTCCTCTGCTCTCAGCCCTATGAGAGGCCACATCCACCCATGTGACCACCAGAGCGTGGATGGGATTTACTGTATCATCCTCAGGAAAGGCTCTGTTGATTTGATCAGCCGCCTGTTGGAGAAGAGCTGGATTGGAGTCCTGGCGGAAGAAGACCTTTCCTACTCCGTCGCTGGTGTCCAGGTCGCCTTGTAGAGCAGCGATCATCTTAAAACTGGCCGGCATGTTGCCGAGGTACTGTGATTCTCCTGTAGGCTTCTCCAGGGCAACAAATCCATTGGTGTTGATGTAAATCTTGTTGAACTGTTCTTCGTAAAAAGTCACGGGCTTTTCCAGAGTGATCTCGTGCGTCTCATCGTTCCCTTCATTAAGAGACTGATCTCCTGCATTTCTCCCGAATGGAAAAAGTTCCTGTCGTGTTATCCCGCTGACAGACACTGACAATCCGAATAAAAGGATCCACACTGACCATCTCTGCCCCTGCCGACCCATTTCCAGACCCGACCGAACCTGAAGCTGCCTGAGACCGACCGACTGACTGACTGACTGAATAAGTGCGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU799620 True 968 lncRNA 0.48 3 1727161 1733717

Neighbor

gene id symbol gene type direction distance location
CI01180000_01576739_01578505 GNG4 coding upstream 147755 1576739 ~ 1579406 (+)
CI01180000_01542059_01545609 GGPS1 coding upstream 181081 1542059 ~ 1546080 (+)
CI01180000_01492241_01493781 NA coding upstream 232715 1491671 ~ 1494446 (+)
CI01180000_01380859_01385445 NA coding upstream 341378 1380701 ~ 1385783 (+)
CI01180000_01372608_01374455 NA coding upstream 352614 1370761 ~ 1374547 (+)
CI01180000_01747067_01755038 GPR137B coding downstream 13350 1747067 ~ 1755257 (+)
CI01180000_01828938_01830221 DNAJC12 coding downstream 95221 1828938 ~ 1830814 (+)
CI01180000_01832263_01834405 COX5B.2, COX5B2, COX5B coding downstream 98296 1832013 ~ 1834999 (+)
CI01180000_01865632_01870994 NA coding downstream 131792 1865509 ~ 1871089 (+)
CI01180000_01915282_01926129 NA coding downstream 181175 1914892 ~ 1926269 (+)
G678945 NA non-coding upstream 19542 1706515 ~ 1707619 (+)
G678946 NA non-coding upstream 114614 1518353 ~ 1612547 (+)
G678948 NA non-coding upstream 134114 1591172 ~ 1593047 (+)
G678869 NA non-coding upstream 294298 1431965 ~ 1432863 (+)
G678929 NA non-coding upstream 295420 1431505 ~ 1431741 (+)
G679064 NA non-coding downstream 1700 1735417 ~ 1735761 (+)
G679069 NA non-coding downstream 31593 1765310 ~ 1765538 (+)
G679052 NA non-coding downstream 42993 1776710 ~ 1777125 (+)
G679072 NA non-coding downstream 44873 1778590 ~ 1779698 (+)
G679077 NA non-coding downstream 69688 1803405 ~ 1808055 (+)
G678637 NA other upstream 571489 1149551 ~ 1155672 (+)
G678751 NA other upstream 661070 1059843 ~ 1066091 (+)
G678440 NA other upstream 1575509 147934 ~ 151652 (+)
G679076 NA other downstream 61453 1795170 ~ 1799433 (+)
G679324 NA other downstream 655150 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 956045 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1819560 3569165 ~ 3573135 (+)
G680736 NA other downstream 2031974 3765691 ~ 3784441 (+)

Expression


Co-expression Network