CI01180000_01832263_01834405 (COX5B.2, COX5B2, COX5B)


Basic Information

Item Value
gene id CI01180000_01832263_01834405
gene name COX5B.2, COX5B2, COX5B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1832013 ~ 1834999 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_01832263_01834405.mRNA
TGTTTAAATCTTCCTTCAGACGGAAATAAAGGCAGACGGAACAGATTTTACTTTTATTTTTACTGTCCTCTCTAGTTACACCTGTCCGCTCTTCCTGTTCGTTCATTGGGCAAAGTCCAGCGGTTCTTCTCTTTGATTGGTCCATCATCGGTGTCAATCAATTTAATGACTTTCACTGACGCTGTTCCACATACTGTAGTGACTGTCAGCGGGAGAGCGCGCGCACACAAGACTGGAAGTTTAAAGTCAATATGGCAAGTAAAATCCTTCTGAGAGCCTGTCGAGTGACTCTGATGGGCAGACAAAATATTTTAATGAAAACACCTCAACGTGCGATGGCCGGGAAAGGTATTCCAACAGATGACGAGCAGGCTGCAGGTTTGGAGAGACGCATTCTGCAGGCGCTGAAAAAGGGCCAGGATCCGTACAGCATATTCAAGCCAAAGGAATACACTGGATCCAAAGACGACCCTCATATTGTTCCAAGCATCAATAACAAACGGCTGGTGAGGAGGACAACACCGCTATTGTTTGGTTCTGGCTTCATGAGGGAAACCCTCAGCGCTGCCCGTCCTGCGGCTCACACTACAAACTGGTCCATCATGAGCTGCCACATTGAGCTGAAGCTTCTAGACCACAAACACCTGCACTTCTGAACCAAAGTGCCTATGCCAAACATGTACAGGATTCAATAATAAAATAATTTAATACAATAAAAGGGCCATGATGTGTTTTTGTTGCATTGCAATGTGGAACTCAAACACTAAAACACGTGATTAAAAAAATAATCACAACATCAAAACTAGAAAATATTGTGTTTATTTACAATTTACAAACACAAGAAAAATGTCAGCATTTGTTGAATTGCTTCCACATACCCTTCAACACACACACACACACACACACACACACATAATGGCACAGCAACTAGTAGCTCATATACACACACACACACACACACACACACACACACGTGTGATGAGTGATTTAAGACTAACAGAGTTTTAACTTGAATGTCCTGCACCATGAACGAGTGCAATAATCCAACTCACTTATTTTAATTGGTCATTTATTATTACTCTGAAAATTATTTGATTTTTTAAAATCACGCAAACTTCTTAACACCTGTAAGACTTGGCATTGTCACTCCAGAATATGAACATTATAACAGTGATGAACACATTCAGTGTCCATCAGACACATTCTTGCACCTGCTATCAGATTTTGGTACTTACTCAATCTTGGAAAA

Function

symbol description
cox5b2 Predicted to enable cytochrome-c oxidase activity and metal ion binding activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Is expressed in brain; gill; heart; liver; and skeletal muscle.
cox5b Predicted to enable cytochrome-c oxidase activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Located in mitochondrion.

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02265 COX5B; cytochrome c oxidase subunit 5b

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_01832263_01834405.mRNA True 1249 mRNA 0.41 4 1832013 1834999

Neighbor

gene id symbol gene type direction distance location
CI01180000_01828938_01830221 DNAJC12 coding upstream 1199 1828938 ~ 1830814 (+)
CI01180000_01747067_01755038 GPR137B coding upstream 76756 1747067 ~ 1755257 (+)
CI01180000_01576739_01578505 GNG4 coding upstream 252607 1576739 ~ 1579406 (+)
CI01180000_01542059_01545609 GGPS1 coding upstream 285933 1542059 ~ 1546080 (+)
CI01180000_01492241_01493781 NA coding upstream 337567 1491671 ~ 1494446 (+)
CI01180000_01865632_01870994 NA coding downstream 30510 1865509 ~ 1871089 (+)
CI01180000_01915282_01926129 NA coding downstream 79893 1914892 ~ 1926269 (+)
CI01180000_01942458_01949580 NA coding downstream 107128 1942127 ~ 1950647 (+)
CI01180000_02158036_02158965 HS3ST1L1 coding downstream 322351 2157350 ~ 2159222 (+)
CI01180000_02322594_02323609 NA coding downstream 485353 2320352 ~ 2323752 (+)
G679080 NA non-coding upstream 22873 1808882 ~ 1809140 (+)
G679077 NA non-coding upstream 23958 1803405 ~ 1808055 (+)
G679072 NA non-coding upstream 52315 1778590 ~ 1779698 (+)
G679052 NA non-coding upstream 54888 1776710 ~ 1777125 (+)
G679069 NA non-coding upstream 66475 1765310 ~ 1765538 (+)
G679160 NA non-coding downstream 195739 2030738 ~ 2031031 (+)
G679165 NA non-coding downstream 216528 2051527 ~ 2061011 (+)
G679202 NA non-coding downstream 263542 2098541 ~ 2098808 (+)
G679204 NA non-coding downstream 264699 2099698 ~ 2106093 (+)
G679050 NA non-coding downstream 286270 2121269 ~ 2127987 (+)
G679076 NA other upstream 32580 1795170 ~ 1799433 (+)
G678946 NA other upstream 275862 1518353 ~ 1612547 (+)
G678637 NA other upstream 676341 1149551 ~ 1155672 (+)
G678751 NA other upstream 765922 1059843 ~ 1066091 (+)
G678440 NA other upstream 1680361 147934 ~ 151652 (+)
G679324 NA other downstream 553868 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 854763 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 1718278 3569165 ~ 3573135 (+)
G680736 NA other downstream 1930692 3765691 ~ 3784441 (+)
G681137 NA other downstream 2948306 4783305 ~ 4785631 (+)

Expression


Co-expression Network