CI01180000_00955725_01050852 (SIPA1L2)


Basic Information

Item Value
gene id CI01180000_00955725_01050852
gene name SIPA1L2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 954922 ~ 1051826 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_00955725_01050852.mRNA
AGTATATATACATTGCATTTAGGGGCTCCAGTACTTTGTGGGAGCAAATAAATGTGGCATGAAAATAAAGACATTTTCCTGAGTTCTCCTTGCCTAAAACATAATCCAGTTTGAAAACCATTGAATGTTCCCTTAAGTTTATCTCTCCGCATGGTTAACAAGACTGATTTGAAACCCTACTTGGCCAATACAAGTAAGCAAAAGAAATAAGCATTTATATTTTTAAATGATCTCTTTGTGAGAAAACCTTCTTGAAGGAGTCATCAGGCCTGTTTTGCGGTACACACCCTGCTACTTATCTAACAGTCTTACATTGTTCTGCCGGTCATAAGGAGGTTTTGAGAAAGACATCCCACTGTCTTGGAAGAGTATCTGAATAAATATATTCTGCTGTTCTCTGTGAGATGCCTTAATGTGCTTTTGTTTTTCTCTTTGCTCCCAACAGATCGCTCTCCTCCAGCTGTCGTCCTAAATTAGCTGAACTCTGTGAAAGGATAGCTGTTTCAACTGACCCCTGAAGCTCCAGCCGTCCGTGACACCCAAATGCTGTCTGTCTTTCATCAAACTGGTCACTCCTGAAGAAAAATGGACTTGGAGTGAAAGGAGCCCCTTCATGTGGGCAGACAACTCTTAAGCTAGTTGAGATAGCTGGCCTGGGACTCAAATGGGTGACCTATGACAATGTAACCAATAAGGGGACTTGAGTTCTCGCTTTCCCAAGCAGCTGCAAGCAGGATATGAGCTTGAGCCGTGGGCATCGACGATAAAACAAACCTTCCATCGCTTGAGGGCTTCTCTAACGTCATGCAGTCATCTGAGGAATTGTTTACCAGGAAGCTGAAAGCATTGAATGGGAGTATGGGACATCCAGCGGCCAACACACAGGGCAAGCTGGAAGGGGGTGGTAAAACAAACGGGACGCCTGCTATGCCTAAAATGGGGGTGCGAGCCAGGGTGACGGACTGGCCCCCGAAAAAGGAGGGTTGGGAAACCCGAGGCGGGCCCAACTACGAGAGCGTCATCACGGCCTTCCAGAACGGACAGCCAGACCAAAGTGTGGAGATCACGGATTTGGGTGAAGCATCATTGGAGCCTGATTATTCGGATACAAAATATTCCCTGAGTGACCTTCTGAGTCGATCCCCTTTAAAGGGGCTTCATCCCATTCGCCAGCGGAGTAATAGTGACGTGACCATCAGCGACATTGATGCGGAGGACATAATGGACCAGAACGCCGTCAACCCCAACACTGGTGCCTCGCTGCATCGGGAGTACGGCAGCACTTCCTCTATTGACCGCCAGGGTCTCGGGAATGATGGGTTCTTTACCATGTTGCGAGGATACCGGATTGACAATTTGGACCATCGCAGCGCCCCGCCTGTCGGTTTCCCAGAGCTCCTTCGTTACGACACAACCCTCTCCCCAAGCTTGCAGACCGCTGCTCAAATAGCCCGCGGTGAGATCGTCCGCATCTCGGGCTACGACTACGTGGACAGCTCCCTCCTCTACAGCCGAGAAAGGGAGAAGTCTTTCATGCGTCGTCTCAAGTCGGAGTCATCCGAGACGTCGCTGTTCAGGAAGTTGAGGACTATTAAGAGCGAGAACGACGGTCTGCGGCTCTCCACCGAGCAGGACGACCGCCGGCCGCTCAGCTTCCAGAAATGCTTCGCTCACTATGACGTCCAGAGCGTCCTCTTCAACATCAGTGAAGCGGTGGCCAACCGTATCAGCCTGAGCCAGAGGAAGAACACCACCACCGGAGCTTCAGCCGCCTCGCAGTACCAAGTCCCAGGAGGTGGACAAGTGGGTGGGAATACTACTGGACCTCCATCCATGTTCGAATCGCCGCTGGGAAGTCGAGAAGACCTCAATCCCAAGGAGAACCTGGATGCAGATGAGGGGGATGGGAAGAGCAATGGATTGGTGCTCAATTGCCCGCATTTTCGCAATGAGATTGGTGGAGAGGGGGAGAGGAGGATCTCTCTCTCCAGGGCCACCAACACCACCTACAGTGCTGGAGGAGAAAACTGCTCTTTTGAGTCGTCCTTGAGCTCCCACTGTACCAATGCCGGCGTGTCTGTACTGGAGGTGCCACGGGAAAGCCAGGCAATCCACCGTGAAAAGGTCAAGCGGTACATCATCGAGCACATCGACCTGGGAGCGTATTATTACCACAAATATTTCTATGGGAGAGAGCACCAGAACTACTTCGGGGTGGATGAGAACTTGGGTCCGGTGGCCATCAGCGTGCGGAGAGAAAAGCTGGATGATGGGAAAGACAAAGAGGCGTCACAGTATAACTATCGGGTCACCTTCAGGACGAGTCAGTTAACTACCTTGCGAGGGGCGATCCTGGAGGATGCTGTGCCTTCCACGGCGAGGCACGGGACGGCCCGCGGTCTCCCTCTGAAGGAAGTGCTGGAGTACGTGGTGCCTGAGCTGAACATCCAGTGCCTCCGACTGGCCCTCAACTCACCCAAAGTCCCCGAACAGCTCCTCAAACTGGACGAGCAAGGGTCTGCCACCCACACGGCCCTCAGGGGCGCGTACAAAAGAGCAGGAACCGTATCACGTTACCTTGGGCTGCTGCGGGAAAGGTTCACTGCTCACTTGATGCGCTGCTCGAGTAGATGCCGTGGAAGTCACTGGCTGCTCCTAATCCAAAACAGTCGGCTGAAGGTTTCAGAGACCAAGGTCGTCATGACAACAGCATGGTTTCCAAGCTGGGAATACTTGACCCAGCTGAGTTTCCAGCACAAAGTGGGCGTCCTGTATTGTAAAGCGGGTCAGAGCACAGAGGAGGAGATGTACAATAATGAGAACGCCGGGCCGGCGCTGGACGAGTTCCTGGATCTGCTCGGTCAGAGAGTCCGACTGAAGGGCTTCACCAAGTACCGAGCACAGCTGGACAACAAGGCGGACTCGACCGGCACTCACTCTCTCTACACGACCTACAAGGACTATGAGCTGATGTTCCACGTCTCCACACTTCTGCCCTACACACCCAACAACAGGCAGCAGGTCAGTGTCCTCATTTTTCTGAAGCCCACTTATATTCTTCATGCTAATGAGCTCTCTTGTGATTGGCTAATGTCTTCACATAGGGGTTCTGATTACCCTGATTTGTTTTATTATGTGATAATTACTGAGTTAGGGATGTTGGGATGTGTTGGTGCTTTTCTGTCGGCTGATCCTGGAGGGGATCGGGCTGTGATGTGTGTCAGATTCTTCTACAGGTGGAATAGACGAATCCACTGGTCTGCTGGAGACGCTCTGATTAGGAGATATACGTGGAAATCAGAGCGTCGATTGGCAGGATTAGAGGATTTTCTGTCTTTTTCTTCTCCAACTTCAATTCTGTTCGATTGCGCAGGATTAGCGAATAAATCCCTGGCGTTGCTCAGAAAGAGGCACATAGGAAATGACATCGTCACCATCGTGTTTCAGGAGCCTGGTGCCTTGCCCTTCACACCCAAAAACATCCGGTCCCATTTCCAGCATGTGTTCGTCATCGTTAAAGTCCACAATCCGTGCACTGAGAATGTCTGCTACAGGCAAGTGAAGCAGCTGTCTGAGAACGATGCCTTTGATTTACATGTATCCAGATCAAAAGATGTGCCTCCGTTCGGCCCTCCCATTCCTAAAGGCGTGACCTTTCCCAAGTCAGCCGTCTTCAGGGACTTCCTGCTGGCTAAGGTGATCAACGGGGAAAATGCGGCCCACAAATCTGAGAAGTTTCGTGCCATGGCGACCCGTACACGGCAGGAGTATCTCAAGGACCTTGCGGAGAACTTCGTGAGCACGACGACGGTGGACTCTGCGGTGAAATTCAGCTTCATCACGCTGGGGGCCAAGAAGAAGGAGCGTGTGAAACCGCGGAAGGACGCACATCTCCACAGCGTGGGTGCCGTCACCTGGAGCGTGGTGGCCCGAGATTTCGGACAGTCGGCAGACGTGGAGTGCCTGCTGGGGATTTCCAACGAGTTCATCGTGCTGATCGAGGAGGAGTCCAAGAATGTGATTTTTAACTGCTCCTGTCGGGATGTCATTGGTTGGTCTTCAGGCATCATGAGCATTAAGATCTTCTATGAGCGTGGAGAGTGCGTGATGTTTTCCGCACATGACAACTGTGGAGAGGACATCAGAGAGATCGTACAAAGACTTGAGGATACTTTCATTCAGATGTCTATCTTCTCATCTCGGTCCTTTCGCTTTTACCAAAACATGCTAATTCTTTTCCTCTCTTGGCTGAAGAGGCGTTTTGTGTACTCGGGACTGCGACTGCTGTCAGACGCGACGCTCCCAGAACAGATGTTTCTCATTCGGGAGCCGCTCAGAGTCATTATGAAACAAGCCCCGTGTCACCTGTCTGAGCGGTTAGTTGATTTGATGGAGATTAGATATTCCCCGAGCGTAACCCTCCGCAGCGCCGCACGCCTTCAAAGTCAACGCGCCGCAGAGGGCTGCTGGGATCTGGAGCGTGTGCACGTCTGTTCTGGACGAGATGCTGTCGCTCGGCCCAGAATCTGTCAGAAGGCACAGATTGTCACCCGCGGCTGCGAGACCACAGAAATGACCTTACGCAGGAACGGTCTTGGCCAGCTCGGCTTCCACGTCAACTTCGAGGGCATCGTGGCTGACGTGGAGCCGTTCGGATACGCGTGGAAGGCCGGCTTACGTCAGGGCAGCCGTCTGGTGGAGATCTGCAAGGTGGCGGTGGCGACGTTGACCCACGAACAGATGATCGACCTGCTGCGCACCTCCATCACCGTCAAGGTCGTCATTATCCAGCCATATGAGGACGGAGCTCCCAGAAGGGGATGTTCAGAGCTCTACCGCATTCCTATGGTGGAGTATAAGCTGGACAGTGAAGGAACGCCCTGCGAGTACAAGACGCCCTTCAAAAGAAACACCACCTGGCACCGTGTGCCCACCAGCGGCCAGCCTCTTCCTCGCGGATCCCCCACCCAGGGTCCCGATCGCATGCCGTGCCAGCAGATCCTCCAGACCGCCATCCCACGCAGCACCTCTTTCGACAGGAAGTTGCCAGATGGACCCAGGACCGTACAAGATATGGAGAACCCTCAGATCTCGTCCTGCAGTAAAGGAGAGGCGTCTCAACACTACCGCAGCTCACCCAGTAACCAGTCGTCCTCCAGTGACCCCGGACCCTGCGGGAGCGCCAGCTGGAACCAGCAGCCCGGATACGACGGGTGTCAGTCTCCCGTGCTCCATGAGCGCTCTGCTGAAGCCCAGGGCATGCTGGGAGACGGGGAGATGCTGAGGGAGAGGGAGCCCACCCTCGAGAGAACTCGCTCTGCAGGTGTGATTCAAACACAGCCTCACTTTGTAGTTATCCTTCATAAGACTGAAGATGTTCTGGGAATCTCAAAGCTTATCCGTTATTCTATCTTCACAGAGGCGAAATGGCACGTCCCTTCCACCAAGATCCTCAACTCTTTGAAGGAAAGAGGCAAGGATTCACCGAACAAGTTGACGCGGCAGGGCGGCGATAAGAACTCCAGCCACTCCAGCAGTAACACTCTGTCCAGCAACGCCTCCAGCAGTAACAGTGATGAGAAGCACTTCGGCTCCGGGGACCTGATGGATCCAGAGATGCTGGGTCTCACCTACATTAAAGGAGCCTCCACTGACAGCGGCATTGACACCGCGCCCTGTAGCATGAACCCGGGAGTGGCTAATGCATCCGTGGGCCGTGTCGTGCTCCAGGGCCGGGGCGCGTCTGATCCAGGACACCCGTGGACACCGGAGCTGACTGAAGAAGGTTCAATGGAGGAGGAGGACCATGGCAGGTTGTACCTTCCTCAGAGCTATGCCGCAGCTCTGGCCACTGGACATACACCTGCGGATGGGAGTATAGGAGAACTGAGCGAGATCTCATCTCATTCTAGCTCCAAGCTCACGTCCTCTCCAGAACATTCTGGAGCCCAGGCAGTTCCCTACAGTAGCCAGGAGCCCGGGCCCAGCATTGATGCACACACACACAGCCGCCGTAGGAGGGCCGATGACAAACCGATCCCGGACGAGCCCCCAATTCAGTCTGAGTGTGGTGGAGCAGAGAGCTTGTTGTCTTTCCTTCTGAAGGCTCTAGCCGAGCGGTCCAGGCAGCTGTACGCCGGAGAGACATCCTGTCGGCTACAGGAGAGAGGACGGGACAAACTGAAGGACGCAGGTCTGCAACCCAACATGTCTAAAGAAGAATACATGAAGATGATGCTGCCTGAAAGCCCACCTGGAGAGAGCAGCCACAGGAAGTGCCCTCAGAAGCAGACGGGTCATTGTGCTCTTAGGGCATCAGCGGCGGGCAGCCCGTCACCGCGGCGTTCCCTGTACCGGACTCTTTCGGACGAGAGCGTGTGCAGTAATAGGAAGGGATCGTCCTACGCCAGCTCACGGAGCTCCATGCTGGACCAGGCCATGCCCAACGACATCCTGTTCAGCAGCACTCCACCCTACCACAGCACACTGCCCCCTCGCATCAGCCTCAGCCAGCCCGCGTCCAACCTCAAGGATGAGTTCTGGTTCTCTGACGGCTCCCTCGCAGACCGGGCGAAGTTCAGCGACCCGGGTCTCATGCCTCTACCAGACACCGCCACGGGCCTGGACTGGTCTCACCTCGTTGACGCGGCAAGAGCCTTTGAAGATCATGTGAGATCACAATGCATTGCTATCGGATGCTGTTCAGTTACGGTCGTGTCTCAGTCAGCACGTTTACTTATCATTGTGACATTGAGAACACATCATATGGGTCCTGATCTGAGTCTGTCCGATGTGTGCTTGTGTCCAGACCAGCGCGTGGCCTCGTTCTGCACCATGACGGACATGCAGAGAGCCGAAGCGCTGCAGATCTCCCGCGAGCTCACCAGACGTGTGGCGGCCGCGGAGGGAGCCGCGCTGGAGGCGGGCGATACTTCTCCGGCCACACTGACGGGCAAAGTCAATCAGCTGGAGGTGATCCTGAGACAGCTGCAGTATGACTTGAAAAAGGAAAAGGAGGACAAGGCGATCCTTCAGGTGGAGGTGCAGCACCTGAGGCAGGACAACATGCGTCTGCAGGAGGAGAGCCAGACGGCGGCCGCCCAGCTCAGGAAGTTCACAGAGTGGTTCTTCCACACCATCGACAAGAAGCCTTGATGGGGACTCCGTCTGCCCCGACTTCTTGGAGAGGTTCCTCTGTCTTTGGGGCAAACGAGAGTCAAAAACCACTGGAGAACTGTGTGCCGCTGGAGCTGGATGCTTCAGCGGCATCTACCTACGCTAGCAAAGCCCAATTCCTACTGCAATTCCAATGAGATGTAGAATGTAAGTACATACTGGACTGAGGAAGCCACTGGTGCTCGTTGGTGTAGCTGGTTCACTTGCATTGAGAAACGGGGCAGTTTAACATGGAGAATGTACTAAATCAGCAACTAAACGATGATCCTGGAGGTGGATTATGAATGTAACGCATCAAGACTTGTAGTAGCTGGGCATTTCATTCACAAAGTTTTCATTTTCTGCCTCCGTTTTTGAAAGGTACAATCAAACGTTGAAGTTCGACAGTACCTCCATGCGTCATCTGAATGATTTCTGTCCACAATCATCAAGTTCTGGCAATAATTGTTGAGTAGCTGAACTTCCCCAACAAGATTTCCTGAAACTGTCCTGCAACTGAGATTGTGCCTCTAAGAAAAGATGAAGCAGGTGCGAGCATAACGTCGCTTTCTGTTCCTTCCAAACACATGCCTTGTCTCCGGCTCACTGCGTCCCGATGTGCAGTTCCTCCCGCAGTGAACCACTATCACATGCCAAAACGCGTCCATCTCTGTACAGAACCTCCAATCAAGTGTCTTGTATTTAACACTGTTATTTAAGCTTATTTAACCTAAATTAGTTTATTTTATTAAAATGAAAAGGCTTCTGGTGCGGACGGCTGCAGTGAGAAGGCCATACTGTGACGGCTGTAGTTTTGCCAGGACTGTGTCCAGTACATAGATATATTGATGATTTGTCTTTTTTTCCCTCATTCCAACATTTGGATGCTGCTAGATAACACTTTGTTGGTTTCTACGCTTTTACAAATGTGTTTCTCTGTAAATGTAAGATGGGACATTGGTTGCTTTTTTTA

Function

symbol description
sipa1l2 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity. Predicted to act upstream of or within regulation of small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Is expressed in brain; solid lens vesicle; and somite. Orthologous to human SIPA1L2 (signal induced proliferation associated 1 like 2).

GO: NA

KEGG:

id description
K17702 SIPA1L2, SPAL2; signal-induced proliferation-associated 1 like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_00955725_01050852.mRNA True 8128 mRNA 0.53 30 954922 1051826

Neighbor

gene id symbol gene type direction distance location
CI01180000_00947514_00949868 NA coding upstream 4016 946421 ~ 950906 (+)
CI01180000_00862066_00867985 NA coding upstream 86810 860746 ~ 868112 (+)
CI01180000_00812535_00858607 NA coding upstream 95917 811857 ~ 859005 (+)
CI01180000_00765917_00776252 NA coding upstream 178011 765797 ~ 776911 (+)
CI01180000_00737754_00743866 NA coding upstream 210711 735310 ~ 744211 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding downstream 144960 1196786 ~ 1224915 (+)
CI01180000_01372608_01374455 NA coding downstream 318935 1370761 ~ 1374547 (+)
CI01180000_01380859_01385445 NA coding downstream 328875 1380701 ~ 1385783 (+)
CI01180000_01492241_01493781 NA coding downstream 439845 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 490233 1542059 ~ 1546080 (+)
G678639 NA non-coding upstream 47540 902610 ~ 907382 (+)
G678638 NA non-coding upstream 71894 880016 ~ 883028 (+)
G678736 NA non-coding upstream 77324 877352 ~ 877598 (+)
G678660 NA non-coding upstream 151432 802951 ~ 803490 (+)
G678653 NA non-coding upstream 155984 798689 ~ 798938 (+)
G678641 NA non-coding downstream 59377 1111203 ~ 1116492 (+)
G678773 NA non-coding downstream 66463 1118289 ~ 1118645 (+)
G678775 NA non-coding downstream 74112 1125938 ~ 1126610 (+)
G678631 NA non-coding downstream 104496 1156322 ~ 1159139 (+)
G678646 NA non-coding downstream 121809 1173635 ~ 1177276 (+)
G678440 NA other upstream 803270 147934 ~ 151652 (+)
G678751 NA other downstream 8017 1059843 ~ 1066091 (+)
G678637 NA other downstream 97725 1149551 ~ 1155672 (+)
G678946 NA other downstream 466527 1518353 ~ 1612547 (+)
G679076 NA other downstream 743344 1795170 ~ 1799433 (+)
G679324 NA other downstream 1337041 2388867 ~ 2397360 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location