RNA id: TU799630


Basic Information

Item Value
RNA id TU799630
length 419
RNA type TUCP
GC content 0.49
exon number 3
gene id G678946
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1518353 ~ 1612547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCGAGCAGCAGGGATGAGTGAGCTTCCTGTCAAACCCAGACATGACAGATCAACTGAAGGGTTTCTTTGTAGAAACGGAGGGATGGATGGAGACAAAAGAGCAACTTCTGAAAGGATTCTTCTGGAACCATACATGTACTTGTTACAGCTGCCAGGAAATCAAGCATCATTTCCAGCACTGCTGAAGAAGAAGACGGCACCTGGTAGGCTTTCAGATGTTCAGCGTTGCTGGCCAACCACTCCACCAGATCCCTGGAAACCACATATCCAGACCCGCAGGCGAAGGCTGGATACGCAGGACTCGCATACTCCAGTTCCTGCCACTTACCGACACGATCGACGGCCCAATTCTGCCTGAAACTGAAGAACACGGTCCATTAGACAACTCATTAATGACACACAAATGTAGAGAGCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799547 lncRNA upstream 85490 1431965 ~ 1432863 (+) True G678869
TU799607 lncRNA upstream 86612 1431505 ~ 1431741 (+) True G678929
TU799546 lncRNA upstream 87386 1429873 ~ 1430967 (+) True G678868
TU799606 lncRNA upstream 90014 1428052 ~ 1428339 (+) True G678928
TU799569 lncRNA upstream 160761 1349918 ~ 1357592 (+) True G678891
TU799634 lncRNA downstream 35021 1591172 ~ 1593047 (+) True G678948
TU799627 lncRNA downstream 150364 1706515 ~ 1707619 (+) True G678945
TU799620 lncRNA downstream 171010 1727161 ~ 1733717 (+) True G678942
TU799752 lncRNA downstream 179266 1735417 ~ 1735761 (+) True G679064
TU799760 lncRNA downstream 209159 1765310 ~ 1765538 (+) True G679069
CI01180000_01492241_01493781.mRNA mRNA upstream 23907 1491671 ~ 1494446 (+) True CI01180000_01492241_01493781
CI01180000_01380859_01385445.mRNA mRNA upstream 132570 1380701 ~ 1385783 (+) True CI01180000_01380859_01385445
CI01180000_01372608_01374455.mRNA mRNA upstream 143806 1370761 ~ 1374547 (+) True CI01180000_01372608_01374455
CI01180000_01196818_01224406.mRNA mRNA upstream 293438 1196786 ~ 1224915 (+) True CI01180000_01196818_01224406
CI01180000_00955725_01050852.mRNA mRNA upstream 466527 954922 ~ 1051826 (+) True CI01180000_00955725_01050852
CI01180000_01576739_01578505.mRNA mRNA downstream 20588 1576739 ~ 1579406 (+) True CI01180000_01576739_01578505
CI01180000_01747067_01755038.mRNA mRNA downstream 190916 1747067 ~ 1755257 (+) True CI01180000_01747067_01755038
CI01180000_01828938_01830221.mRNA mRNA downstream 272787 1828938 ~ 1830814 (+) True CI01180000_01828938_01830221
CI01180000_01832263_01834405.mRNA mRNA downstream 275862 1832013 ~ 1834999 (+) True CI01180000_01832263_01834405
CI01180000_01865632_01870994.mRNA mRNA downstream 309358 1865509 ~ 1871089 (+) True CI01180000_01865632_01870994
TU799296 other upstream 362681 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 452262 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1366701 147934 ~ 151652 (+) True G678440
TU799769 other downstream 239019 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 832716 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 1133611 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 1138256 2694407 ~ 2695436 (+) True G680192
TU801631 other downstream 1997126 3553277 ~ 3563250 (+) False G680723

Expression Profile