RNA id: TU800043


Basic Information

Item Value
RNA id TU800043
length 418
RNA type TUCP
GC content 0.59
exon number 3
gene id G679324
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2388867 ~ 2397360 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGTAACGAGGCAGCAGTCGTGAATGATGCTGTCTTCCACATACAGGCCTCTCTCCTCCAGCGTATGGACGGGATGCTGTTCATGGCTCCAGGAGAGTCTGACAGAAGGGTCGAGGTACGAGGCGGTGCACTGCAGGGGCAAACGGTCCCCCCGGAACACCAGCTGCCTCTGGGTGGGAATGAGCTGCAGGACGGGCAGCTCCAGCGGTCCATCACAGGTGAGCTGGTGTTCCTGAAGGCTGCGGAGCTCCAGTCCATGAAGACGGCTCGGATACACACATACGGATTCATTGCCCACACGCACAGACTGAATCCTGACCCACGACAACAACCAGCGCAGCTGACAATCACAGAACAGATAGTCTGTGCCCATGCTCAGCACTCTGAGGGAAGGCACGTGTGTGAAAAGCCCCTCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799735 lncRNA upstream 146994 2238490 ~ 2241873 (+) True G679047
TU799915 lncRNA upstream 173933 2210789 ~ 2214934 (+) True G679218
TU799925 lncRNA upstream 187432 2197189 ~ 2201435 (+) True G679228
TU799738 lncRNA upstream 260880 2121269 ~ 2127987 (+) True G679050
TU799901 lncRNA upstream 282774 2099698 ~ 2106093 (+) True G679204
TU800066 lncRNA downstream 44915 2442275 ~ 2442571 (+) True G679346
TU800968 lncRNA downstream 175052 2572412 ~ 2572739 (+) True G680148
TU801002 lncRNA downstream 238415 2635775 ~ 2664245 (+) True G680180
TU801038 lncRNA downstream 285874 2683234 ~ 2683580 (+) True G680204
TU801020 lncRNA downstream 296137 2693497 ~ 2695436 (+) False G680192
CI01180000_02362001_02362428.mRNA mRNA upstream 25337 2361960 ~ 2363530 (+) True CI01180000_02362001_02362428
CI01180000_02322594_02323609.mRNA mRNA upstream 65115 2320352 ~ 2323752 (+) True CI01180000_02322594_02323609
CI01180000_02158036_02158965.mRNA mRNA upstream 229645 2157350 ~ 2159222 (+) True CI01180000_02158036_02158965
CI01180000_01942458_01949580.mRNA mRNA upstream 438220 1942127 ~ 1950647 (+) True CI01180000_01942458_01949580
CI01180000_01915282_01926129.mRNA mRNA upstream 462598 1914892 ~ 1926269 (+) True CI01180000_01915282_01926129
CI01180000_02541296_02567509.mRNA mRNA downstream 143936 2541296 ~ 2567783 (+) True CI01180000_02541296_02567509
CI01180000_02574027_02588521.mRNA mRNA downstream 176667 2574027 ~ 2588824 (+) True CI01180000_02574027_02588521
CI01180000_02613130_02639905.mRNA mRNA downstream 214918 2612278 ~ 2639922 (+) True CI01180000_02613130_02639905
CI01180000_02690045_02691641.mRNA mRNA downstream 291911 2689271 ~ 2692183 (+) False CI01180000_02690045_02691641
CI01180000_02951792_02968343.mRNA mRNA downstream 554432 2951792 ~ 2968343 (+) True CI01180000_02951792_02968343
TU799769 other upstream 589434 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 832716 1518353 ~ 1556151 (+) True G678946
TU799296 other upstream 1233195 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 1322776 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 2237215 147934 ~ 151652 (+) True G678440
TU801024 other downstream 292402 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 297047 2694407 ~ 2695436 (+) True G680192
TU801631 other downstream 1155917 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 1156202 3553562 ~ 3563250 (+) True G680723
TU801653 other downstream 1368331 3765691 ~ 3784441 (+) True G680736

Expression Profile