Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU799410 |
| length | 2358 |
| RNA type | TUCP |
| GC content | 0.52 |
| exon number | 7 |
| gene id | G678751 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 1059843 ~ 1066091 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU799298 | lncRNA | upstream | 152461 | 902610 ~ 907382 (+) | True | G678639 |
| TU799297 | lncRNA | upstream | 176815 | 880016 ~ 883028 (+) | True | G678638 |
| TU799395 | lncRNA | upstream | 182245 | 877352 ~ 877598 (+) | True | G678736 |
| TU799319 | lncRNA | upstream | 256353 | 802951 ~ 803490 (+) | True | G678660 |
| TU799312 | lncRNA | upstream | 260905 | 798689 ~ 798938 (+) | True | G678653 |
| TU799300 | lncRNA | downstream | 45112 | 1111203 ~ 1116492 (+) | True | G678641 |
| TU799434 | lncRNA | downstream | 52198 | 1118289 ~ 1118645 (+) | True | G678773 |
| TU799436 | lncRNA | downstream | 59847 | 1125938 ~ 1126610 (+) | True | G678775 |
| TU799288 | lncRNA | downstream | 90231 | 1156322 ~ 1159139 (+) | True | G678631 |
| TU799305 | lncRNA | downstream | 107544 | 1173635 ~ 1177276 (+) | True | G678646 |
| CI01180000_00955725_01050852.mRNA | mRNA | upstream | 8017 | 954922 ~ 1051826 (+) | True | CI01180000_00955725_01050852 |
| CI01180000_00947514_00949868.mRNA | mRNA | upstream | 108937 | 946421 ~ 950906 (+) | True | CI01180000_00947514_00949868 |
| CI01180000_00862066_00867985.mRNA | mRNA | upstream | 191731 | 860746 ~ 868112 (+) | True | CI01180000_00862066_00867985 |
| CI01180000_00812535_00858607.mRNA | mRNA | upstream | 200838 | 811857 ~ 859005 (+) | True | CI01180000_00812535_00858607 |
| CI01180000_00765917_00776252.mRNA | mRNA | upstream | 282932 | 765797 ~ 776911 (+) | True | CI01180000_00765917_00776252 |
| CI01180000_01196818_01224406.mRNA | mRNA | downstream | 130695 | 1196786 ~ 1224915 (+) | True | CI01180000_01196818_01224406 |
| CI01180000_01372608_01374455.mRNA | mRNA | downstream | 304670 | 1370761 ~ 1374547 (+) | True | CI01180000_01372608_01374455 |
| CI01180000_01380859_01385445.mRNA | mRNA | downstream | 314610 | 1380701 ~ 1385783 (+) | True | CI01180000_01380859_01385445 |
| CI01180000_01492241_01493781.mRNA | mRNA | downstream | 425580 | 1491671 ~ 1494446 (+) | True | CI01180000_01492241_01493781 |
| CI01180000_01542059_01545609.mRNA | mRNA | downstream | 475968 | 1542059 ~ 1546080 (+) | True | CI01180000_01542059_01545609 |
| TU799069 | other | upstream | 908191 | 147934 ~ 151652 (+) | True | G678440 |
| TU799296 | other | downstream | 83460 | 1149551 ~ 1155672 (+) | True | G678637 |
| TU799630 | other | downstream | 452262 | 1518353 ~ 1556151 (+) | True | G678946 |
| TU799769 | other | downstream | 729079 | 1795170 ~ 1799433 (+) | True | G679076 |
| TU800043 | other | downstream | 1322776 | 2388867 ~ 2397360 (+) | True | G679324 |
| TU801024 | other | downstream | 1623671 | 2693355 ~ 2694234 (+) | True | G680192 |
