RNA id: TU799305


Basic Information

Item Value
RNA id TU799305
length 212
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G678646
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1173635 ~ 1177276 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACTACCCAAACACCGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACATCTGACCCAGGAGCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTAGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACGTCTGATCCAGGATCTGGGTAACAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799288 lncRNA upstream 14496 1156322 ~ 1159139 (+) True G678631
TU799436 lncRNA upstream 47025 1125938 ~ 1126610 (+) True G678775
TU799434 lncRNA upstream 54990 1118289 ~ 1118645 (+) True G678773
TU799300 lncRNA upstream 57143 1111203 ~ 1116492 (+) True G678641
TU799308 lncRNA upstream 82784 1040385 ~ 1090851 (+) True G678649
TU799480 lncRNA downstream 61531 1238807 ~ 1239064 (+) True G678819
TU799481 lncRNA downstream 62301 1239577 ~ 1239963 (+) True G678820
TU799487 lncRNA downstream 70432 1247708 ~ 1247959 (+) True G678826
TU799488 lncRNA downstream 70870 1248146 ~ 1248444 (+) True G678827
TU799497 lncRNA downstream 73720 1250996 ~ 1303829 (+) True G678832
CI01180000_00955725_01050852.mRNA mRNA upstream 121809 954922 ~ 1051826 (+) True CI01180000_00955725_01050852
CI01180000_00947514_00949868.mRNA mRNA upstream 222729 946421 ~ 950906 (+) True CI01180000_00947514_00949868
CI01180000_00862066_00867985.mRNA mRNA upstream 305523 860746 ~ 868112 (+) True CI01180000_00862066_00867985
CI01180000_00812535_00858607.mRNA mRNA upstream 314630 811857 ~ 859005 (+) True CI01180000_00812535_00858607
CI01180000_00765917_00776252.mRNA mRNA upstream 396724 765797 ~ 776911 (+) True CI01180000_00765917_00776252
CI01180000_01196818_01224406.mRNA mRNA downstream 19510 1196786 ~ 1224915 (+) True CI01180000_01196818_01224406
CI01180000_01372608_01374455.mRNA mRNA downstream 193485 1370761 ~ 1374547 (+) True CI01180000_01372608_01374455
CI01180000_01380859_01385445.mRNA mRNA downstream 203425 1380701 ~ 1385783 (+) True CI01180000_01380859_01385445
CI01180000_01492241_01493781.mRNA mRNA downstream 314395 1491671 ~ 1494446 (+) True CI01180000_01492241_01493781
CI01180000_01542059_01545609.mRNA mRNA downstream 364783 1542059 ~ 1546080 (+) True CI01180000_01542059_01545609
TU799296 other upstream 17963 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 107544 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1021983 147934 ~ 151652 (+) True G678440
TU799630 other downstream 341077 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 617894 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 1211591 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 1512486 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 1517131 2694407 ~ 2695436 (+) True G680192

Expression Profile