RNA id: TU799481


Basic Information

Item Value
RNA id TU799481
length 387
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G678820
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1239577 ~ 1239963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCACGTCAGTAATTTACGCATTTAGCCTATGCGGTAAGATGATATTCTGAACCCAGAATATAACCCAGTGATTTAAACATAAACTGTAAAAAAAGATGGATGACGCACCTTAACTCTCATGCATTGTAGTAAGTGAAGCTGGCAAGCCGCCAGTGTGCCAATATGGCGCTGACATCTTGAGTCTCGAGTCTGCGCATAGTGAACTTGGAGCCCGAGTCTGCGCAGTAGTGAGCGCGAAGTGCAGCCGCGATATCAAGGTCCCGCCCAAACTCGCGCAGAATCGGTTAATACTGCAGAACAACATTACATCAGTGTAAAATAAACAGTTCTGGTAATGTATAAATAAAGTTAAAGCTCCAATCTCCTCCCGATGATCCAGAAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799480 lncRNA upstream 513 1238807 ~ 1239064 (+) True G678819
TU799305 lncRNA upstream 62301 1173635 ~ 1177276 (+) True G678646
TU799288 lncRNA upstream 80438 1156322 ~ 1159139 (+) True G678631
TU799436 lncRNA upstream 112967 1125938 ~ 1126610 (+) True G678775
TU799434 lncRNA upstream 120932 1118289 ~ 1118645 (+) True G678773
TU799487 lncRNA downstream 7745 1247708 ~ 1247959 (+) True G678826
TU799488 lncRNA downstream 8183 1248146 ~ 1248444 (+) True G678827
TU799497 lncRNA downstream 11033 1250996 ~ 1303829 (+) True G678832
TU799508 lncRNA downstream 19389 1259352 ~ 1318254 (+) False G678838
TU799518 lncRNA downstream 36591 1276554 ~ 1277435 (+) True G678848
CI01180000_01196818_01224406.mRNA mRNA upstream 14662 1196786 ~ 1224915 (+) True CI01180000_01196818_01224406
CI01180000_00955725_01050852.mRNA mRNA upstream 187751 954922 ~ 1051826 (+) True CI01180000_00955725_01050852
CI01180000_00947514_00949868.mRNA mRNA upstream 288671 946421 ~ 950906 (+) True CI01180000_00947514_00949868
CI01180000_00862066_00867985.mRNA mRNA upstream 371465 860746 ~ 868112 (+) True CI01180000_00862066_00867985
CI01180000_00812535_00858607.mRNA mRNA upstream 380572 811857 ~ 859005 (+) True CI01180000_00812535_00858607
CI01180000_01372608_01374455.mRNA mRNA downstream 130798 1370761 ~ 1374547 (+) True CI01180000_01372608_01374455
CI01180000_01380859_01385445.mRNA mRNA downstream 140738 1380701 ~ 1385783 (+) True CI01180000_01380859_01385445
CI01180000_01492241_01493781.mRNA mRNA downstream 251708 1491671 ~ 1494446 (+) True CI01180000_01492241_01493781
CI01180000_01542059_01545609.mRNA mRNA downstream 302096 1542059 ~ 1546080 (+) True CI01180000_01542059_01545609
CI01180000_01576739_01578505.mRNA mRNA downstream 336776 1576739 ~ 1579406 (+) True CI01180000_01576739_01578505
TU799296 other upstream 83905 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 173486 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1087925 147934 ~ 151652 (+) True G678440
TU799630 other downstream 278390 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 555207 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 1148904 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 1449799 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 1454444 2694407 ~ 2695436 (+) True G680192

Expression Profile