CI01180000_05552106_05558265 (SLC25A16)


Basic Information

Item Value
gene id CI01180000_05552106_05558265
gene name SLC25A16
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5551875 ~ 5559075 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_05552106_05558265.mRNA
AGTATAAATTTAGAGAACTGAATCTGTTAACATTTCCTCAAACCAGGGACTCGTAAAGTAATACATTTACAACCCTGTCCAACTGTTTATGACTGAAATGACTTTCCTGTGCGCGTAGTCCCGCCTTTGGCACAGATCAGCTGATCAAAATAATACCAATGTGCATGTTTGTTTACTTCATTCCAGAGTGTGCTGAAGACATGAATATACTGGAGTCCTGATATCAGCCATCATGACGACAGAGGCTGTGTCCACAGGGGCTCGACCTCAGATCCCAGCTCCTGTGCAGAAAGATTACTACTACTTTTTGCGCTCTTTCGCAGCTGGAGGTGTTGCAGGGTGCTGTGCCAAGTCCACCATAGCGCCTCTCGATAGAGTGAAAATTTTACTACAAGCTCAAAATCCACATTACAAACACCTTGGAGTGATTGCCACACTTAAGGCTGTGCCAAAGAAAGAGGGTTTTCTTGGACTCTACAAAGGAAATGGAGCTATGATGATCAGGATTTTCCCATATGGAGCCATTCAGTTTATGGCTTTTGATCACTACAAAAAGTTCCTTAACACACAACTTGGAATATCTGGGCACATTCATCGGCTTATGGCAGGATCTATGGCAGGGATGACCGCAGTTATTTGCACTTATCCACTCGATGTTATCCGGGCTCGCTTAGCATTTCAAGTGACAGGAGAGCATCGCTACACTGGCATACGAAACGCCTTTCAGACAATTTACCTTAAGGAAGGAGGAATCACTGGATTCTACCGGGGTCTGACCCCCACAATCATTGGCATGGCTCCATATGCAGGCTTTTCTTTTTTTACTTTTGGTACATTGAAGACTCTGGGACTGACTCACTTTCCAGAGCTCTTAGGCAAGCCATCTCTTGACAACCCTGATGTTCTTGTGCTGAAGACTCACGTCAATCTGTTGTGTGGTGGAGTCGCCGGAGCAATTGCTCAAACTATATGATATCCACTAGATGTTGCCCGGAGGAGAATGCAGTTAGGTTCATCATTGCCTGATTCTGACAAATGTTGCAGCCTCTCAAAAACTCTGAACTATGTGTACACCCAGTATGGCGTCAAGAAAGGACTGTATCGTGGCCTGTCCCTCAACTACATCCGCTGTATACCATCACAAGCTGTTGCCTTCACCACTTATGAGTTCATGAAGCAAGTTCTTCACCTAAACTAGAAGAAGAAGTGACTTAAAGCCTTAAAGGAACAAGTTGAAACGACCCCTGGCAACATCACAGCAGCCCTGCCTGCCATTCCAGTCACCAGTCATGTGAACTCCAGTTCTTACAAAACACCCACACAAACGTCAAACCTGTGGCTGCTTCGCACACCCCAGCAACAGTCACTATGATTACAGAGACAAAAGCTTGCTTTTCCATTATGTGTGGATCAGGAACATGCCCCCTAACAACCGACACTGAAAATACCATGGAAACCTGCGTCTGAAACTTGCCTGCCCTGTATGAAGCCGTCCCATTTCATTTTGTACAATATGCCTCAGCTTATCACTCATATACATTAAGCAAAACACAAAATCACGGTTGATTTTACCTATGTGTACAGGTATATCACAGTGCTTTTAACTATGACTGATGACATCTTTCTTTTTAAACGTCAGAAACCTAAATATTTCTTTGCGAAATTTCATTTATATGTAGCTTTTTATTTCAGTCACCTCAAGTCTTATTGGCTGATGTTTGTCTCTTTTAGTGATCAAGATGACTTACCTCTTCCATTCAGCAATATAGCGAATGGAAAAGAGAATGTACATAATGTCTATGCAGTATTCAGTCATGTTCGCATGCCGACGTTACTGTGGCTCAAATTGTATCTGATGCCTTACAGTGCTGTTAAATTCACAATCTCCGTTTTGAAAGAGAGCAATCCAGTGAGGATGTGTGTGGTGATCAGCATATCACAGCTGATATGTATATGAATCTTAAATTATTGTTCACTGATTTGTGATGGGAAAAATTGGGTCCCTTA

Function

symbol description
slc25a16 Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; alar plate midbrain region; immature eye; intestinal bulb; and optic tectum. Orthologous to human SLC25A16 (solute carrier family 25 member 16).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K15084 SLC25A16, GDA, LEU5; solute carrier family 25 (mitochondrial carrier protein), member 16

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_05552106_05558265.mRNA True 2007 mRNA 0.43 9 5551875 5559075

Neighbor

gene id symbol gene type direction distance location
CI01180000_05460865_05464029 NA coding upstream 87342 5460865 ~ 5464533 (+)
CI01180000_05361478_05362402 NA coding upstream 189369 5361299 ~ 5362506 (+)
CI01180000_05307085_05313251 MAT1A coding upstream 238486 5306869 ~ 5313389 (+)
CI01180000_05276728_05284341 SFXN3 coding upstream 267308 5276418 ~ 5284567 (+)
CI01180000_05236666_05242597 LZTS2A, LZTS2 coding upstream 309127 5235723 ~ 5242748 (+)
CI01180000_05566677_05569815 ALOX5, ALOX5A coding downstream 7602 5566677 ~ 5569854 (+)
CI01180000_05587131_05604001 FAM21C coding downstream 27972 5587047 ~ 5605024 (+)
CI01180000_05605783_05625064 ZFAND4 coding downstream 46708 5605783 ~ 5626277 (+)
CI01180000_05721160_05745421 MARCH8 coding downstream 162025 5721100 ~ 5745673 (+)
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding downstream 192481 5751556 ~ 5758136 (+)
G681269 NA non-coding upstream 19783 5526957 ~ 5532092 (+)
G681405 NA non-coding upstream 30516 5520237 ~ 5521359 (+)
G681227 NA non-coding upstream 49745 5499664 ~ 5502130 (+)
G681400 NA non-coding upstream 52458 5499213 ~ 5499417 (+)
G681222 NA non-coding upstream 112560 5433842 ~ 5439315 (+)
G681425 NA non-coding downstream 24025 5583100 ~ 5583367 (+)
G681426 NA non-coding downstream 24442 5583517 ~ 5583720 (+)
G681249 NA non-coding downstream 72024 5631099 ~ 5639384 (+)
G681242 NA non-coding downstream 103113 5662188 ~ 5666144 (+)
G681268 NA other upstream 178113 5370410 ~ 5373762 (+)
G681137 NA other upstream 766244 4783305 ~ 4785631 (+)
G680736 NA other upstream 1767434 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 1979478 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 2856439 2689271 ~ 2693221 (+)
G681592 NA other downstream 913960 6471995 ~ 6478999 (+)
G681686 NA other downstream 1073833 6632908 ~ 6634989 (+)
G681667 NA other downstream 1096771 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1844072 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 2104348 7694529 ~ 7695667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006547 slc25a16 coding NC_007124.7 CM002897.2 18179096 ~ 18195942 (-)