CI01180000_05721160_05745421 (MARCH8)


Basic Information

Item Value
gene id CI01180000_05721160_05745421
gene name MARCH8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5721100 ~ 5745673 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_05721160_05745421.mRNA
GCTATAAATTCTCTGTTCGTTACAGATAGAATCAATAGGTAATTAGCCTGGGACATAAATGATGGAATCAAACATTGTGCATGCGATCCATGCTGCTTTGATTCGAACGCCCAGCTTCCCCCGGTCTTCAGTGACGCCCTCGAACCAGGATATATGCAGTTCTAATGACCTCGCTCAGGACCTGGGCTCACAGAGGCCCTTACAGGCCACTGTAGTGCTGTTGAACTCTAATGGTAAAAGCTCAGCATCTCAGGGTGTCACCATGACCACGCTCTGCCTGGACTCGCCCACCAAACCCAAAAATAGAACCTTGTTTGGCACAGAATGGCTCTCCCTACTCAAACCATCAGTCAGCTTGAAACCGGAAGGAGGCAATCTGAAGTTCTCAAAGTCTCTGAATGATGTGGGACAAAAGATGGACAGCCTATGCAGCGGTCTTCACTTTATAGACCGCACTTGTTCGGACGGGGAGCTGGGAGTGGAGAAGGAACAACTCATGCAAGATGGCCACATCAAAGCCCTCAATGGTCAAGCCAACTCTCCCCCTCTGTTTGCTTCTCAGCCTCCGTCCTTCCTCAACAACTACAAATACATCTCCAACCCAAGGCCTGAGAACTGCCTGGCTCCCCCTGCTCCTCCCCATTCAGACCTTCAAAGAAGCTCCAACTTCCTGCGCCTCATCTTTCCGCTCACCCGCTCTTCCACCGCGGGAAGTCTGCGGGCGTCTGAGATGGGAAGCTACGCTTCAAAGCTCCACATCACCAAGTCATCCAGCGCCATGCTGGACGCCAGTGAGTCTTGCTGTATGGAGGAGATGGGAGATGACGAAGTGTTCGAGGAGGATTCGTCCCGGTGGAAGCTGAAGATGGAGGGGTTACGGGCTCCTCTGTGCTCTCTCGAGGTGGACAGCGACTTGGATCAATGCTCCTCTCCGCTGTCTGAGAAAAACGGGCCGCTGTCGCCCTACTCCCTGTCGGGGGACTGCTGCAGGATTTGTCACTGTGAGGGGGATGATGAGAGTCCACTGATAACACCCTGTCACTGCACTGGGAGTTTGCGGTTTGTCCATCAGGGCTGCCTGCAGCAGTGGATCAAGAGCTCAGACACGCGCTGCTGCGAGCTCTGCAAGTATGACTTCATCATGGAGACCAAGCTCAAGCCACTCCGCAAGTGGGAGAAGCTTCAGATGACCGCCAGCGAGAGGAGGAAGATCATGTGCTCGGTCACTTTTCACGTCATCGCCATCACATGTGTCGTCTGGTCGCTCTACGTCCTCATTGACCGCACGGCAGAGGAGATCAAACAAGCTACATCAGCCATCTCTAGCATGAATGCTAGTCGCAGCCTGAATAAAGGCAATAATGCTTCACAGCGAGAACGCGCTCTGAACGCAGTGTGCACGGCTGCCCCATACGGAATATTGGAATGGCCTTTTTGGACCAAGCTGGTGGTGGTGGCCATAGGCTTCACGGGCGGACTGGTGTTCATGTACGTGCAATGCAAGGTCTACATCCAGTTGTGGAAGAGACTCAAGGCCTACAACAGAGTAATATATGTGCAGAACCGCCCAGAGACCTGTAAAAAGAACGTTTTTGATAAGCCCTCCCTTCTGGAGCCCAACTTGGATAATAAAGAGGCGTTCGGGCCGGCGCAGTCGGACACAAACTCTTCCCAGTACACAGAGACAGAGGACTACAGTATGGAGATCCTGCAGATGTTATTTTCTCTTCGTTCGTTTGTCCGATCTGTTCCGCTCCAGAGGACACAGCACAAACGCAGCTCTCAAGGTCATAGCAGGGATGTGTCCTTTCTGCTGTCCTCAGTGTCTTCAGAATCATCTGCAATTCAAAATGAGCCTGCCAACATCAAACATCTGAACCACAGCGCTGTATCAGCACTTAAGGCAGATGAGTGGAATGAACAGGATGCTCGATGCTTTTACGAGTCACATTTTTCATCCAGTCTGCTACTTTAACATTAGCAAATGTATCTTTTCAAATATAATGTGGTTTTTACAGTCCATATTGAATCATATGGTTTGGTTGGTGTCAAAAGGGACAACTAAATTCCAAAGGAAATCATTCCCTCTGTTTTGTGGATTTACGTTAAATACTTCGATTTAGATGAACTGCATGTCATCATAGGTCAGTTTAATTGGTGCAAATTGAAGTTATCATTTGCAGCTCAGAATTTTGTACAGCCCTTTATTATTTCATTTATTTCTGT

Function

symbol description
march8 Predicted to enable MHC protein binding activity and ubiquitin protein ligase activity. Acts upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in early endosome membrane; late endosome membrane; and lysosome. Is expressed in blastomere and brain. Orthologous to human MARCHF8 (membrane associated ring-CH-type finger 8).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10656 MARCH1_8; E3 ubiquitin-protein ligase MARCH1/8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_05721160_05745421.mRNA True 2226 mRNA 0.50 9 5721100 5745673

Neighbor

gene id symbol gene type direction distance location
CI01180000_05605783_05625064 ZFAND4 coding upstream 95989 5605783 ~ 5626277 (+)
CI01180000_05587131_05604001 FAM21C coding upstream 116076 5587047 ~ 5605024 (+)
CI01180000_05566677_05569815 ALOX5, ALOX5A coding upstream 151246 5566677 ~ 5569854 (+)
CI01180000_05552106_05558265 SLC25A16 coding upstream 162025 5551875 ~ 5559075 (+)
CI01180000_05460865_05464029 NA coding upstream 256567 5460865 ~ 5464533 (+)
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding downstream 5883 5751556 ~ 5758136 (+)
CI01180000_05875768_05878028 NA coding downstream 129396 5875069 ~ 5878719 (+)
CI01180000_05919195_05919836 NA coding downstream 172432 5918105 ~ 5920447 (+)
CI01180000_05928275_05933064 NA coding downstream 182602 5927492 ~ 5945665 (+)
CI01180000_06060886_06073483 NA coding downstream 313708 6059381 ~ 6074222 (+)
G681254 NA non-coding upstream 39695 5668992 ~ 5681405 (+)
G681242 NA non-coding upstream 54956 5662188 ~ 5666144 (+)
G681249 NA non-coding upstream 81716 5631099 ~ 5639384 (+)
G681426 NA non-coding upstream 137380 5583517 ~ 5583720 (+)
G681205 NA non-coding downstream 27101 5772774 ~ 5780374 (+)
G681428 NA non-coding downstream 37975 5783648 ~ 5783914 (+)
G681440 NA non-coding downstream 57039 5802712 ~ 5802923 (+)
G681451 NA non-coding downstream 84974 5830647 ~ 5831091 (+)
G681459 NA non-coding downstream 100989 5846662 ~ 5846882 (+)
G681268 NA other upstream 347338 5370410 ~ 5373762 (+)
G681137 NA other upstream 935469 4783305 ~ 4785631 (+)
G680736 NA other upstream 1936659 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2148703 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3025664 2689271 ~ 2693221 (+)
G681592 NA other downstream 727362 6471995 ~ 6478999 (+)
G681686 NA other downstream 887235 6632908 ~ 6634989 (+)
G681667 NA other downstream 910173 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1657474 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1917750 7694529 ~ 7695667 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location