CI01180000_05875768_05878028


Basic Information

Item Value
gene id CI01180000_05875768_05878028
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 5875069 ~ 5878719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_05875768_05878028.mRNA
AATATAAATAGATTTCCAGTGGCGTCTTATGAAGCATATATTGGTAGCCAAACTATGTCGTTACATTATTCTAGTATTCGTGCGCTACCGCCAGCATAAGATCAGAAATCCTACTTGTCTCCACACTGTCTGCGCGTCCAAAACTTCCGCCTATGGGAGGATCCGTGGTGACGTCATGGCGCTCCCAAGCTCTCGAGCGTCTCCCTTTCTGCTTGTCCTGTCATAAATCGATAACAATAAAGCTTTAAGGTGTTATTTTAACTTAAACTATTAAATTAACACACGAATGTGAAGAAATACAGTAAAATAGGATTAGTGAAATTATAATACAGTAAAATATGACTTCTGAATACATCACATACAATGTTAAACATTATTTGGAGATTTGTTCCAACTTCCAGTGATTAAAACGGCTGCTTTTTTTCAACAGAAGGCTGTCCACATTGCAAAAACATGGCAAAACATTCTTGGGAATGCCTTATAACCAGCTAAAACTGATTTGAGCAATTGAACAGTGGCGCGTGCTTCCGTCTAAGATCAGCTGACACGAGCACGCGGAAGAAGTAAAGCTTCATACGGAGCGTAGTTTGAAAGTTTATTTTGGAAACATAAAGCAAACGTTTCATTCTTATGAGCATAAAAACTTTTGTGTTGGTCCTCGTTAGAAGCTTCTTTCTTTCTGAACTGTCATTTGACTGCAATGGCATACAACGAGTCAATGGTTGTTGTGAATGGAAGTCAGGTGTCCTGCATTGGGCATGATTGGGAAGACATTCCAGATTTTCTTGGGGCAAAATATGGAGAATTGGCAAGGAGATTAGATCTCAGCTTCAACAAACTGAGGATCCCAACCGCACACAACATCTCTGACTCAATCTACCTGTCGTGCTCACAGTCACACTTTTGCATTAAGTGCAATTTAATACATGCATTATGTGCATTACATGGTCCGCCGTGTCATCGAGACATCAGAGAGCGGCAGGCCTTGAAGGACTCTGAATGGGCCTCTTTTTGTCATGTGAAAATTGTCGTCTTGAGGCAGTTATCTGTGCTGAAAATGTGGATTCTTCCATTTAATTGATTCGCTTTGCACTGGAGTCTGTCACATTAATAATTGCCAAATCCTGTGCTGCTTCAATGTGTCGCACATAAGTGTACGCTTATCGGCGCATTAATATTCCTAATGAGCATTTGTGACTGGCGACCCGGCATTGGTTGAACACTATAGAACCCAGAATTATCTATGTTTAGGTATAAAATTTTATGTAATTTTGCATCATGTACCATCATCAACCGTCATGTGCATAAATTATATAAAATGCGCACAAACAGATATCTGATCGTGACTGAAGTAATAAGTAAAACCACTCCATTTATGGATTCTTAAAGTTAGTGGTTCAGAGGTTTTTTGTGCTTTGTGTTTGTTCTTTAATGCAATGCACCTTATTGCAACATCTGTAATGTTTCCTGATAGTTTCACCATACACATAGTAGCATTGCTACAGAGAGAAATGCTTGCACTGTGGTTTATTGCCTTTGTTGGACCATTATGCTATCATCAAATCATTTATAACTTTTAATGTGTAAGATAATTACCAGAATAGTTGAGCACATCGATAGCCTTTTAATAGTAATGCTTAGAACAATATCATGTTCATTGTCTTTCCATTAAAACCCATTACCGATGCAGTGACATGCACACAGAAGAGTGAGGTTTCCCCACTTATGTTTTGGACTAACCCCAGTCTTGTTCACTTAGAATCACACTGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_05875768_05878028.mRNA True 1771 mRNA 0.39 4 5875069 5878719

Neighbor

gene id symbol gene type direction distance location
CI01180000_05752328_05757955 VDAC2, VDAC2.L coding upstream 116933 5751556 ~ 5758136 (+)
CI01180000_05721160_05745421 MARCH8 coding upstream 129396 5721100 ~ 5745673 (+)
CI01180000_05605783_05625064 ZFAND4 coding upstream 249958 5605783 ~ 5626277 (+)
CI01180000_05587131_05604001 FAM21C coding upstream 270045 5587047 ~ 5605024 (+)
CI01180000_05566677_05569815 ALOX5, ALOX5A coding upstream 305215 5566677 ~ 5569854 (+)
CI01180000_05919195_05919836 NA coding downstream 39386 5918105 ~ 5920447 (+)
CI01180000_05928275_05933064 NA coding downstream 49556 5927492 ~ 5945665 (+)
CI01180000_06060886_06073483 NA coding downstream 180662 6059381 ~ 6074222 (+)
CI01180000_06183820_06187700 NA coding downstream 303430 6182149 ~ 6187901 (+)
CI01180000_06369051_06375352 NA coding downstream 489662 6368381 ~ 6377253 (+)
G681459 NA non-coding upstream 28187 5846662 ~ 5846882 (+)
G681451 NA non-coding upstream 43978 5830647 ~ 5831091 (+)
G681440 NA non-coding upstream 72146 5802712 ~ 5802923 (+)
G681428 NA non-coding upstream 91155 5783648 ~ 5783914 (+)
G681205 NA non-coding upstream 94695 5772774 ~ 5780374 (+)
G681506 NA non-coding downstream 300953 6179672 ~ 6179921 (+)
G681521 NA non-coding downstream 328373 6207092 ~ 6208009 (+)
G681537 NA non-coding downstream 380090 6258809 ~ 6262932 (+)
G681540 NA non-coding downstream 391431 6270150 ~ 6383813 (+)
G681268 NA other upstream 501307 5370410 ~ 5373762 (+)
G681137 NA other upstream 1089438 4783305 ~ 4785631 (+)
G680736 NA other upstream 2090628 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2302672 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3179633 2689271 ~ 2693221 (+)
G681592 NA other downstream 594316 6471995 ~ 6478999 (+)
G681686 NA other downstream 754189 6632908 ~ 6634989 (+)
G681667 NA other downstream 777127 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1524428 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1784704 7694529 ~ 7695667 (+)

Expression


Co-expression Network