G681540


Basic Information

Item Value
gene id G681540
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6270150 ~ 6383813 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU802491
TTTTTTTTTTCTTAAGGTGTGCCTTTAGCCCCATTGTACCCTATAATTTATTTATCTTTTTTAACTAAACTACACTTTTTTTTTAAAAACTAAACTTAAGAAATGCAATATAGCAGTTTGAAACTGTAAACTGATCAAATGTACAGCAAAAATCTAGCTAAAGCTACCAATCCCAGCTGCTTATCTCTTATTTATTTGCCGAAGTTTTAACAAAAACCTCTTGCTAAGCATACACATCTAGTCTTCATCTGTGTTAATGCTATGTATATTTTTCTGTATCACCATCTGAAGTTGCTCTGGTATAAATGCACTCTTTGAGTGTTTGTGGCTGCTGTTGCTATGGAAACGCTCAAGCAGGACTATGGGCCATCCGCCTGCCACTGTGTTTGTTGGAATTTGGGGAGGGAAACAGAAGGATGGGATCTCCTGAAACCGCAAAACTGTTTTAAGAGAATAGCAACATTATCATCGTCAAAATACATTTCTTTAAAGACTATTTTAAATGTAATAAACATGAGTGGTAGTGTCATACAGCATTTACAAGAATTTACACAATACATGTACATTTCATCTTAACTTGGGCTGTAATGTTAAAACAAGGTAATGGATTTTAAAGGCAAGGATGCAAACATTACAAAGACAGTGGACGTATACAATATGGTAAAAACAGCGTTATAATTTGGGCCGTTATGAAGACTGTGGAAAGACGACAGTTATGAGAGTCATATCACAGGAGTTGTCTTATTTTTACATGGTAGTTGGAGCAAGGCGTTTGCATGGGGTAGGGGAAGGGGTGCAGGAGGGGTGCATCGAGTGCCAACAAGAGGAAAAGTGTTTTTACCAGACCACCAAGAATGAAGAAGACCATGAAAAGGCGTCCAAGAGTGGTTCTTGCATAGACGTCTCCATATCCCACAGTGGACATAGTGACCATTAATAAGTACACACATTCCCAATATGAGAGCGGTTGAGAGTTTTGAAAGTTTTCCCATGGATCCCCTGAGTTTTCCACCTGCAGTGGAGAGGAGAGCGAAGAGAAAATTACTGACGGATCAAAACGTGATCCTCTACAGCCATCTACTGTCCATAGAGAAAATCACAAAAATGAATTGTGAGAGCAACCAAACTGAGGATTTAGTGGCGATCAGAGTCTCTGCTGCCATCTAGTGGCACAGATGTCCTCTGGCACATCCTGATAAAAATAAAAAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACGAAAAAAGGAACAACAAAACACCAAATCTTTAGATAAACTACAACACAAACCATATACGCCACAAAGGGACAGACGTGACGCTCGCTTAGGAGCTTTTTCCTCCCACGAATCTGCACGTGCACTCCTTTCTTTGACTGTTTCTCCAGGGGCATGGGGAAAGGGGGGCGTGTGTGTGTTTTTTCACTCACCAGATGAATGAATCCTGCAGCAGTGAGCCATGTGCTTATGAAGATGGAACACAGGTTCACCAGCTTGATGGAATTACTTGTCTTTAAGATATTCAAAAACTGTAAAATTTCTGAGAATTGTATCAATCTCAAGGCTCTTAGAAACCTCAGACCGAGCCAGCTCCTGTTCAGATAAACTGACACAAACACGGGCGGTACGGTGAAGAAGTCCACCACTGAGTTCACCTCCAACCAGAACCACAGCTTATCATTGGCTGCTATGAAACGCAGGCCAAAGTAGAGTAAGAAGAACACATTGAATGCCATGTCAATTTGTAACGTGAAGTCTTTGTAGAAATTCTGACAGGATTCTATAGGATCCGAAGAATCTATGAAGTATATTCCCAGAGCTCCGATGCTGAGTGCAAAGACCAACACCACCAGAACTCTGCCGGTAAGGGTCTGTGCTGAGATCATGACCCCCGCCCAGTCTTTGACGGAAGTCATCCAGCCCACCTCACTGGCTGGGGCCTCATCTTTATCATTCAGGATCTTCGGTGGGCCATCAGCCTGACTGTTCATAGGATTATTCACCTTCTGTGCCTCCTTGGTTTTGATGTTGCAGTGGCAGCAGACAGTCCACAGGTACTTGAGGGTCCTCCACAGGAGGATGATGAAGAGACCCCCGAAGAACGTCACCATGGATGAGGCGAGGAAAGCCCACCACATGCGCTGACCATTGTTGTCACAGGGTACGTCTGGTGAGAATGGAATGATCACGTCCATCTTCGATATAGAGACAGAAGAGTCCGGATTTTTATTAAAATTGATATTATTACTCATTCTACAGCTGCTGCCATAGGATCCGTTGCCATCTGCCACAGCTAGCATTGAGAAGAAGCTTTGGACAGCTCCTGCCAGCGCCCCCAACCCCAGCCATCAGCCATATTGCTTCAAATATCCCTCTCCTTTCTTCTCTCTGTTTTTCTATCCACGTCTGCTCAGTGTGAATAATATTTTTTGTGTGAGAAATACAGCAGCTTGGAGAGCGTGAGGAGAAATTGCGCGTCCGTTCCCCTCAGCGCGAGACATTTAAATCCGCATTAATGACGACTTCATATTTTCATTTTGAAGGGTTTTCCTCGTCTTTTTCCATCTCTTCTAAATAAAATGGAGTCTAAAACCAATATTCGTGTGGTCTCTGTTATTATCAGTGAGAAAGAAGTGGATTCGTGAGAGAAAAGCGGACAAACGGCTGTCTCTTCAGGCGGCTTGTGTACGTCCAAGCTCTGTGTCGTCCATCCAGTGACAGGGTCGCCTCAGCGGTGTTTAATCGATATTTCTCTCATAAACGCCAACTTAATCAATGTCTCCAAAGCTATTCAGCTGGGAGTCAAGCTGTTCTTTGTAGTCTTGCTAGGCTCAATGGAAGAACCCGTTCAAATATCGGCGTTTCAGCGACTATTCCGCTCTCAATGACATGTCGCTGTCCCCATTCACTTTCCTCAGCTGATCCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU802491 True 2954 lncRNA 0.42 7 6270150 6383813

Neighbor

gene id symbol gene type direction distance location
CI01180000_06183820_06187700 NA coding upstream 82249 6182149 ~ 6187901 (+)
CI01180000_06060886_06073483 NA coding upstream 195928 6059381 ~ 6074222 (+)
CI01180000_05928275_05933064 NA coding upstream 336898 5927492 ~ 5945665 (+)
CI01180000_05919195_05919836 NA coding upstream 349703 5918105 ~ 5920447 (+)
CI01180000_05875768_05878028 NA coding upstream 391431 5875069 ~ 5878719 (+)
CI01180000_06503211_06517041 NA coding downstream 119398 6503211 ~ 6517102 (+)
CI01180000_06532667_06556697 VWC2 coding downstream 148463 6532276 ~ 6557504 (+)
CI01180000_06581704_06589445 NA coding downstream 197177 6580990 ~ 6589481 (+)
CI01180000_06608734_06626459 IKAROS, IKZF1 coding downstream 224921 6608734 ~ 6626812 (+)
CI01180000_06638215_06643427 TTL coding downstream 253996 6637809 ~ 6643820 (+)
G681537 NA non-coding upstream 7218 6258809 ~ 6262932 (+)
G681521 NA non-coding upstream 62141 6207092 ~ 6208009 (+)
G681506 NA non-coding upstream 90229 6179672 ~ 6179921 (+)
G681459 NA non-coding upstream 423268 5846662 ~ 5846882 (+)
G681606 NA non-coding downstream 13705 6397518 ~ 6403932 (+)
G681591 NA non-coding downstream 58490 6442303 ~ 6467224 (+)
G681592 NA non-coding downstream 88182 6471995 ~ 6478999 (+)
G681682 NA non-coding downstream 246012 6629825 ~ 6630063 (+)
G681683 NA non-coding downstream 246517 6630330 ~ 6630546 (+)
G681268 NA other upstream 896388 5370410 ~ 5373762 (+)
G681137 NA other upstream 1484519 4783305 ~ 4785631 (+)
G680736 NA other upstream 2485709 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2697753 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3574714 2689271 ~ 2693221 (+)
G681686 NA other downstream 249095 6632908 ~ 6634989 (+)
G681667 NA other downstream 272033 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 1019334 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1279610 7694529 ~ 7695667 (+)

Expression


Co-expression Network