G681591


Basic Information

Item Value
gene id G681591
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6442303 ~ 6467224 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU802546
GCATGACATGCGCTGCTATGACAAATTCAGCTGAATTTTAAATCCTGCTATATGGCAAATAAGACAATCCACAGGCAAAGAGTGAACATGCTCTTGAGTGTCTTCCTGAAAAATAAACCAAAAGCTAAAGGCTGAAGCTTAATAATGGATGAACTTGAGAGCATTCTTCAAAAAAAAAACAAAAAAAAAACCATTTAATTATGCATATGATGCAGTAAATAAATTTCTTTACTATAAAATTTAATTATGCCAAACATGATGAGTAAAACTAACATTTATGGCACATTTTCCCCAGTATATCATGTATATTACTTAAAATACATAAATGTGTAAAAACTATTTTGGCATTCAGATGTGTGCACAATACTTAATCCAGAATTTTCTTGCGATCATCTTTCAAACAAAGCATAATTGGAGAAAAAAAATGCATCCAAAACATGCACTCTTTCTGATATAAACAATAATTCACTAAGCCACTGCTTTCAGTGTAGAAGGCACGTAAAGATATATAGTTTTCTACTTCTGAAATAAAGATATAGTAATAACAGCATAAAATGTAACGTGCAGCATATATGCACACAAGTGGCTTTGCATTGAGTACAGTAAAACATGCAAGTATGTAATAGAGGGAAAACGAAGGTAAGGCATAAAATGTGTCAAAATTGTGGCGTGGCTTCCTGTCCTCTGAGTGTCGAGATCATCTGTGGCTTCTAGTCGCTTCCACCGCAGAGCTTCAGCAGTAGTTTCTTATAATCCCCTGAAGTGTCTCCAGATATGGCTGTGTACAGAGATTTCCCATAATTCTTCATGTATTCCTGACGAATGTCCAGCATGTCCACCTCAGAGCGGGTCACCATGATGCGAATCAAAGTGCGATCCTTGGTTCCTGCTCCCTTCATGGCCTTGTAGAGTCTCTCAGCAAAGTAGGCCGGTGTGTTCTTAATGCATTTCACAACAGCCAGCATGCCACTCTCCAGGTCTCCAGACATCTCTCTCTCGATACTCTTCTCAATGTCTCTGCCACACATGTGC
>TU802543
CTTTAATGAGAGGTTTGATCCAGATATGCAGGTCTAATTATGATTATGACCACTTTTGCCTAGGTAATATCACTTTAAATATAAAGTCTCCTATCTTTATTCTGTTTATTGTAATGCTTGTCATGCCTGATCTAGTAGGAATAATTATATGAATGCGTATAATAATATTTATCAGGGTGTTTTGAGGTCACAGTTGAATTAGCATCAGAAGTCAGCACTGATAGTACCAAGGGGGCTTTTGAAGAAACACCAAGTTAATTTGAGTTGCACGCTTCAGTTATAATCTCTTTCAGGCAGGATTTACTTAGCATTTCATATGTGTGTTTTGTCTCTGTACAGAATAAGCAAATGAGAAACACAAAGACAGCACCATCATTACCTCTTTTTTGCCTCAATAGGGAGGTGGTTGGCAATCATAACAGCTAAAACTACAAAAAAGAAAAAAAAAGTGTATATAATAAAAATAAAAAAAACCCCATTTAATTATGCATATGATGCAGTAAATAAATTTCTTTACTATAAAATTTAATTATGCCAAACATGATGAGTAAAACTAACATTTATGGCACATTTTCCCCAGTATATCATGTATATTACTTAAAATACATAAATGTGTAAAAACTATTTTGGCATTCAGATGTGTGCACAATACTTAATCCAGAATTTTCTTGCGATCATCTTTCAAACAAAGCATAATTGGAGAAAAAAAATGCATCCAAAACATGCACTCTTTCTGATATAAACAATAATTCACTAAGCCACTGCTTTCAGTGTAGAAGGCACGTAAAGATATATAGTTTTCTACTTCTGAAATAAAGATATAGTAATAACAGCATAAAATGTAACGTGCAGCATATATGCACACAAGTGGCTTTGCATTGAGTACAGTAAAACATGCAAGTATGTAATAGAGGGAAAACGAAGGTAAGGCATAAAATGTGTCAAAATTGTGGCGTGGCTTCCTGTCCTCTGAGTGTCGAGATCATCTGTGGCTTCTAGTCGCTTCCACCGCAGAGCTTCAGCAGTAGTTTCTTATAATCCCCTGAAGTGTCTCCAGACATCTCTCTCTCGATACTCTTCTCAATGTCTCTGCCACACATGTGC
>TU802544
CTTTAATGAGAGGTTTGATCCAGATATGCAGGTCTAATTATGATTATGACCACTTTTGCCTAGGTAATATCACTTTAAATATAAAGTCTCCTATCTTTATTCTGTTTATTGTAATGCTTGTCATGCCTGATCTAGTAGGAATAATTATATGAATGCGTATAATAATATTTATCAGGGTGTTTTGAGGTCACAGTTGAATTAGCATCAGAAGTCAGCACTGATAGTACCAAGGGGGCTTTTGAAGAAACACCAAGTTAATTTGAGTTGCACGCTTCAGTTATAATCTCTTTCAGGCAGGATTTACTTAGCATTTCATATGTGTGTTTTGTCTCTGTACAGAATAAGCAAATGAGAAACACAAAGACAGCACCATCATTACCTCTTTTTTGCCTCAATAGGGAGGTGGTTGGCAATCATAACAGCTAAAACTACAAAAAAGAAAAAAAAAGTGTATATAATAAAAATAAAAAAAACCCCATTTAATTATGCATATGATGCAGTAAATAAATTTCTTTACTATAAAATTTAATTATGCCAAACATGATGAGTAAAACTAACATTTATGGCACATTTTCCCCAGTATATCATGTATATTACTTAAAATACATAAATGTGTAAAAACTATTTTGGCATTCAGATGTGTGCACAATACTTAATCCAGAATTTTCTTGCGATCATCTTTCAAACAAAGCATAATTGGAGAAAAAAAATGCATCCAAAACATGCACTCTTTCTGATATAAACAATAATTCACTAAGCCACTGCTTTCAGTGTAGAAGGCACGTAAAGATATATAGTTTTCTACTTCTGAAATAAAGATATAGTAATAACAGCATAAAATGTAACGTGCAGCATATATGCACACAAGTGGCTTTGCATTGAGTACAGTAAAACATGCAAGTATGTAATAGAGGGAAAACGAAGGTAAGGCATAAAATGTGTCAAAATTGTGGCGTGGCTTCCTGTCCTCTGAGTGTCGAGATCATCTGTGGCTTCTAGTCGCTTCCACCGCAGAGCTTCAGCAGTAGTTTCTTATAATCCCCTGAAGTGTCTCCCTATAGGCTGTGTACAGAGATTTCCCATAATTCTTCATGTATTCCTGACGAATGTCCAGCATGTCCACCTCAGAGCGGGTCACCATGATGCGAATCAAAGTGCGATCCTTGGTTCCTGCTCCCTGTGCAACCATAACAGCAACTGTTTAAATCGGGTCTGAGCAATAAATCAGAATTGAGCACCAAGGCTCGCAGTGTGAATGTAGCCTTAGTTTTTGAGCGTGTTCTGATCTGAAACTCTCAGGCCACTTCCAACTTTCTTCAAATCAGAATCTAAGTACTGCCTATTGTAGTTATAAAAAGTGTTCCCCCAAATTATTTCAGAATTGAGTAAATCTTACAATAATATTACTGTCATTATAATTATTCAAATACAAATATTAACAGGTTTCACACTCTTTTTGACCTGTTCCAGTCATTTGTAATTACTGGACAAGACAATGATTTGTATATATTGCTCTAAATATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU802546 False 1032 lncRNA 0.38 5 6442303 6467224
TU802543 False 1104 lncRNA 0.34 2 6463728 6467224
TU802544 True 1523 lncRNA 0.35 2 6463728 6465357

Neighbor

gene id symbol gene type direction distance location
CI01180000_06369051_06375352 NA coding upstream 65050 6368381 ~ 6377253 (+)
CI01180000_06183820_06187700 NA coding upstream 254402 6182149 ~ 6187901 (+)
CI01180000_06060886_06073483 NA coding upstream 368081 6059381 ~ 6074222 (+)
CI01180000_05928275_05933064 NA coding upstream 509051 5927492 ~ 5945665 (+)
CI01180000_05919195_05919836 NA coding upstream 521856 5918105 ~ 5920447 (+)
CI01180000_06503211_06517041 NA coding downstream 35987 6503211 ~ 6517102 (+)
CI01180000_06532667_06556697 VWC2 coding downstream 65052 6532276 ~ 6557504 (+)
CI01180000_06581704_06589445 NA coding downstream 113766 6580990 ~ 6589481 (+)
CI01180000_06608734_06626459 IKAROS, IKZF1 coding downstream 141510 6608734 ~ 6626812 (+)
CI01180000_06638215_06643427 TTL coding downstream 170585 6637809 ~ 6643820 (+)
G681606 NA non-coding upstream 38371 6397518 ~ 6403932 (+)
G681540 NA non-coding upstream 58490 6270150 ~ 6383813 (+)
G681537 NA non-coding upstream 179371 6258809 ~ 6262932 (+)
G681521 NA non-coding upstream 234294 6207092 ~ 6208009 (+)
G681506 NA non-coding upstream 262382 6179672 ~ 6179921 (+)
G681592 NA non-coding downstream 4771 6471995 ~ 6478999 (+)
G681682 NA non-coding downstream 162601 6629825 ~ 6630063 (+)
G681683 NA non-coding downstream 163106 6630330 ~ 6630546 (+)
G681685 NA non-coding downstream 164429 6631653 ~ 6631929 (+)
G681674 NA non-coding downstream 177884 6645108 ~ 6645323 (+)
G681268 NA other upstream 1068541 5370410 ~ 5373762 (+)
G681137 NA other upstream 1656672 4783305 ~ 4785631 (+)
G680736 NA other upstream 2657862 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 2869906 3569165 ~ 3573135 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other upstream 3746867 2689271 ~ 2693221 (+)
G681686 NA other downstream 165684 6632908 ~ 6634989 (+)
G681667 NA other downstream 188622 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 935923 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1196199 7694529 ~ 7695667 (+)

Expression


Co-expression Network