CI01180000_06608734_06626459 (IKAROS, IKZF1)


Basic Information

Item Value
gene id CI01180000_06608734_06626459
gene name IKAROS, IKZF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 6608734 ~ 6626812 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_06608734_06626459.mRNA
GAATACCTGCACAGGATGGAGACAGAGGAGGCACAGGAAATGTCCCAGATAACAGGAAGGGACAGCCCGACTGCAAACGAGGGGGGAGAGGACCAAGATGAGGCTATGCCTGTTCCTGAAGACTTGTCAGCCAGCACGGGCCTCCAACACAACAACCGCACAGACAAACCACTGGCCTGTAATATAAAAGTTGAGGCTCGGAGTGACGAGGAAAACGGGCTGACCTGTGAGATGAATGGAGAGGCGGAGGAATGTGCAGCCGAGGACTTGCGCGTGCTCGATGGCTCGGGGGCCAAAGTGAACGGCTCCCACGCAGGCCCTGACAGCAAGCCGGCCGCCTACCCCACGGCCGGGGGCATCCGCCTCCCCAACGGGAAGCTGAAGTGCGATATCTGTGGGATAGTTTGCATTGGGCCCAATGTGTTGATGGTGCACAAGCGAAGTCACACTGGGGAGAGGCCATTCCAATGCAACCAGTGTGGTGCTTCCTTCACTCAGAAGGGTAACCTGCTCCGACACATCAAACTGCACTCTGGCGAGAAACCTTTCAAATGTCACCTGTGCAACTATGCCTGCCGCCGCAGAGACGCCCTTACCGGACACCTGCGCACGCACTCTGTTGGAAAACCTCATAAGTGTGCATACTGCGGGCGCAGTTACAAGCAGCGGAGCTCATTGGAAGAACATAAGGAGAGATGTCACAACTACCTGCAGTGCATGGGCCTTCAGAATAGCATTTATACAGTGAAGGAAGAGAACAGCCAGAATGAGCAGAGGGAGGACATGCCTGCATCTGAGAGAGCCTTGGTGCTAGACAGGATAGCTAACAATGTAGCTAAGCGTAAGAGCTCTATGCCCCAGAGGTTTGTGGGAGAGAATCGTTTGTCGGAGCTGTCATTCGAGGGCGGCTCAGGTGAGCTTATGCAGCCTCACGTGATCGATCAGGCCATCAACAGTGCCATTAGCTATCTGGGAGCAGAGTCCTTGCGGCCTCTGGTTCAGACCTCCCCTGGCTCTTCTGACATGGTGGTCAGCCCTATTTACAACCTCCACAAGACACAATCAGCTGAAGGCAACGGCGTATCTGCTAAAGACAGCGCCGCAGAGCACCTCCTTCTGCTGTCCAAGTCCAAATCAGCCTCCGTGGAGAAGGACGGCTCCCCCAGCCCCAGCGGCCAGGACTCCACCGACACCGAGAGCAACAACGATGAGCGGGTGGCCGGGGGAGGCGGGGGAACAGCCGCAGGTGGTCTCATCTACCTGACCAATCACATGGCTCCAGGTATGCGTAACGGAGGTCTGCCAGTGGTAAAAGAAGAGCAGCAGCGGCATTTTGAGGCCTTGCGGGCAGCAGGTATGGAGCTGGGTATGGCGTCATCGGAGGGGTTTAAGGTGCTGAGTGGAGAGGGAGAAGAATTGAGGGCGTATCGCTGCATCCATTGCAGAGTTTTGTTCCTGGACCACGTCATGTACACCATCCACATGGGTTGCCATGGCTTCCGAGACCCCTTCGAGTGCAACCTGTGTGGTTACCGCAGTCAGGACCGCTACGAGTTCTCATCGCACATCACGCGTGGAGAGCACCGCTTCTGAGTTAACACAAAAAGACGTTCCACATACACTTGACTACACACACACACACACACACACATGAAACAATTCAACAGAATTTTTTAGACACTGTCCAAACACTGGATTTGTTTTTTTGTTTTTTTAGTGTAACATTGATTTGGACATATGTACATACAGTTAGCCTATATATTTCACTGTCTTGTCTATTTTTCTACAATGTTGTGACTTGTATGTAAACCCATGAGACTTTACAAAAAAAGAAAGAACTGTAACTGAAAATATAAATTAAGTGTTGTTTGAAAGTGCAAAATTTATATATCATCTCATCTAAAATTGACATGTTTTTAGCTGCCCTATAGTTATGAAGACAAAC

Function

symbol description
ikzf1 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within B cell differentiation and T cell differentiation in thymus. Is expressed in several structures, including hematopoietic cell; hematopoietic system; immune system; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma and common variable immunodeficiency. Orthologous to human IKZF1 (IKAROS family zinc finger 1).

GO:      GO:0044212, GO:0033077, GO:0030183, GO:0003700, GO:0045944, GO:0003676, GO:0046872

KEGG:

id description
K09220 IKZF, ZNFN1A; IKAROS family zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_06608734_06626459.mRNA True 1945 mRNA 0.52 7 6608734 6626812

Neighbor

gene id symbol gene type direction distance location
CI01180000_06581704_06589445 NA coding upstream 19253 6580990 ~ 6589481 (+)
CI01180000_06532667_06556697 VWC2 coding upstream 51230 6532276 ~ 6557504 (+)
CI01180000_06503211_06517041 NA coding upstream 91632 6503211 ~ 6517102 (+)
CI01180000_06369051_06375352 NA coding upstream 231481 6368381 ~ 6377253 (+)
CI01180000_06183820_06187700 NA coding upstream 420833 6182149 ~ 6187901 (+)
CI01180000_06638215_06643427 TTL coding downstream 10997 6637809 ~ 6643820 (+)
CI01180000_06704767_06711402 BAG5 coding downstream 77955 6704767 ~ 6712156 (+)
CI01180000_06714748_06715005 NA coding downstream 87793 6714605 ~ 6715107 (+)
CI01180000_06755090_06760583 NA coding downstream 128278 6755090 ~ 6760583 (+)
CI01180000_06762114_06762590 NA coding downstream 135302 6762114 ~ 6762772 (+)
G681592 NA non-coding upstream 129735 6471995 ~ 6478999 (+)
G681591 NA non-coding upstream 141510 6442303 ~ 6467224 (+)
G681606 NA non-coding upstream 204802 6397518 ~ 6403932 (+)
G681540 NA non-coding upstream 224921 6270150 ~ 6383813 (+)
G681537 NA non-coding upstream 345802 6258809 ~ 6262932 (+)
G681682 NA non-coding downstream 3013 6629825 ~ 6630063 (+)
G681683 NA non-coding downstream 3518 6630330 ~ 6630546 (+)
G681685 NA non-coding downstream 4841 6631653 ~ 6631929 (+)
G681674 NA non-coding downstream 18296 6645108 ~ 6645323 (+)
G681652 NA non-coding downstream 18630 6645442 ~ 6646838 (+)
G681268 NA other upstream 1234972 5370410 ~ 5373762 (+)
G681137 NA other upstream 1823103 4783305 ~ 4785631 (+)
G680736 NA other upstream 2824293 3765691 ~ 3784441 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other upstream 3036337 3569165 ~ 3573135 (+)
G681686 NA other downstream 6096 6632908 ~ 6634989 (+)
G681667 NA other downstream 29034 6655846 ~ 6659546 (+)
CI01180000_07403482_07412752 HELLS other downstream 776335 7403482 ~ 7413190 (+)
CI01180000_07694615_07695428 MRPL14 other downstream 1036611 7694529 ~ 7695667 (+)
G682232 NA other downstream 1741373 8368185 ~ 8368935 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location