G678448


Basic Information

Item Value
gene id G678448
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 299171 ~ 301328 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799087
ACATTTGTGGTCTGGATATATCCAGTTAATAATTCACTGGAATGCAGAATTCACTTTGAAATAATATCACACATTGCTGTTAATGAACATTTTTGGTTAAGGCAACGTATGTTACATAATACAGATCTATATTACTACAGTGATATTTAACCAAATCCCTTTAAGACGAGTCATTTCACTCGGCGGCCATCTTAGAAACGTCTCTCGGGCATCCCAAGTGCAGCTTCTATCTCTTTGAATGAGGAAACATCAAATTCTCCAAAGCTGTTTGCAAAGCTTTCGATTAAATTCATATTTGAAATCAATAAAATCTGACAACATCTGTCTCATAAATTCTGTTTCTAAACGCTTGAATCGAATCAAAAACGGCATTTTTCAGGCTGCATCAAAGCTAATGCGCATGTGCAGTCCTAAGAGTGCATCTGACTGTTTCTATAGGAACCGGAGCTTCTAACTGTGCGTTCACACCGCCGCCAGCGAGAGCGTCAAAATTCGCCTTGGCTGCCCTGCCAACAACGCTGTACTGTGCGTTCAAACCGCCGCCGGCAGGAGGGTCAAAGTAAATGACAAGTTGTGGCAACCAATCTGAATTCTCTCAAGCGAGGACCTCTACGTTCCGATTGGTTACTGCTGAACTGCGTCATAGCTCATTACCATAAAGTTGACCTGACTTCAGCTCTCTTCGACGCTCTCACCGTCCAAGACGCGCCGCGCCGTGCCGCTCTCGCCCGTGGCGGTGTGAACGCACGGCAATAGCAGCTGCAGTGACGCGATGACTTTACCAATCGCCGATTGGTTTTTATTTAGAAGGCGGGACTTATTCCGCCATATTGCGCTTTGCACTTTCTCCCATTCATAATAAAACGACTGCACCGTCTTTATAAAAATTTAAAGCCTTTGTCTGTTATTGCTGTGGAAAAAATCCCCTTTTGGGGTTATTCATGGTCTGTTGAAAGTACCTTATTGATGCTTTTACACTTTTAAATGTTTTAATGTTCGATGGTTGAAGGATTAGTAGAATAATGTCATCTCATTGTACCCATTTTTTAAATGTATTATTGCGTTCATAGAGCGAGCCTTTCACTTGATTGTTTACAGCTTAACGGAAGTTACACCCATAATTCGCGCAAAGCGTCATTTTTTTCCCTTTTTTTTTTTTTTTTAATTAATACTTTTATTCAGCAAGGAAACATTAAATTGATCAAAAGTGACAATAAAGACATTTATAATGTTATAAAAGATTTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCTATTCATGAAAGAATCCTAAAAAAATGAATGTAGCACAACTGTTTTCAACATTGATAATAATAAATGTTTCTTGAGCAGCAAAATCATCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTTGATCACAGAAATAAATTACACTTTACAATATATTAAAACATAAATTTATGTTATTTTAAATTGTAATAATATTTCAATTTTTTTATTGTATTTTTGATCAAATCAATGAAGCCTTGGTGAGCAGAAGAGACATTTTTTCAAATTCCTTAAAAAACATTTGAACAGTAGGCCTAGTGTACAGTATGTCAGTAGCTATTGTAACCAATGTCCAATTTCGTCTCTTGCAAAATGACAAATTGAGTGCAGTGTGAACAAAGACAGTCTTCCACAGTTCACTGTCTTTGCCTTAATGCATGTTAATGCGCAGACCTCAAAACTGTGATGCTACAAATGTTATTAAAAAAAAGTATATAAAAGTTCTGTATTTTTCAGAAGTGATTGTAATGTATTTGTCTTCAAAAGTGTTATAAAATTAAGCTACATTGTGATTTTAAGCTTTTTGTGAACTTTTTTTTTTTTGCGTAGAATCCTATTTGTATATTAAAATGCATTTTGTAAATATGAAGGACAAGCTCTTTTCTATATGTAGTGTTTTTTTACATTTTAACTTAGTTAAACTGACATGAAGAAAATCTATGGGAGAAATGTTCAAATGTTGTGTGAAGTCATTACTGTACCTTTAGATTGAGGTACAATACAATATCTATGTTAATTTGAGATTGTTATAAAAGTGTGCAATTTATTACTGCCATTATGAACAATATCTTATTAAATACTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU799087 True 2158 lncRNA 0.35 1 299171 301328

Neighbor

gene id symbol gene type direction distance location
CI01180000_00263000_00297934 MERTK coding upstream 705 263000 ~ 298466 (+)
CI01180000_00250154_00256723 LHCGR coding upstream 40503 250154 ~ 258668 (+)
CI01180000_00105493_00124081 NA coding upstream 175088 105382 ~ 124083 (+)
CI01180000_00009241_00055691 ANAPC1 coding upstream 243221 9241 ~ 55950 (+)
CI01180000_00306160_00314770 NA coding downstream 4832 306160 ~ 315744 (+)
CI01180000_00361420_00364335 NA coding downstream 60092 361420 ~ 365126 (+)
CI01180000_00368639_00375465 ZC3H6 coding downstream 67311 368639 ~ 376247 (+)
CI01180000_00427700_00437883 NA coding downstream 126322 427650 ~ 438466 (+)
CI01180000_00661446_00671602 MSH6 coding downstream 359781 661109 ~ 672188 (+)
G678501 NA non-coding upstream 48258 250685 ~ 250913 (+)
G678499 NA non-coding upstream 55460 243506 ~ 243711 (+)
G678493 NA non-coding upstream 63969 233616 ~ 235202 (+)
G678490 NA non-coding upstream 71439 226492 ~ 227732 (+)
G678488 NA non-coding upstream 75725 220048 ~ 223446 (+)
G678508 NA non-coding downstream 21421 322749 ~ 326978 (+)
G678521 NA non-coding downstream 50629 351957 ~ 444582 (+)
G678444 NA non-coding downstream 86513 387841 ~ 390386 (+)
G678554 NA non-coding downstream 133405 434733 ~ 487143 (+)
G678442 NA non-coding downstream 144411 445739 ~ 492631 (+)
G678440 NA other upstream 147519 147934 ~ 151652 (+)
G678751 NA other downstream 758515 1059843 ~ 1066091 (+)
G678637 NA other downstream 848223 1149551 ~ 1155672 (+)
G678946 NA other downstream 1217025 1518353 ~ 1612547 (+)
G679076 NA other downstream 1493842 1795170 ~ 1799433 (+)
G679324 NA other downstream 2087539 2388867 ~ 2397360 (+)

Expression


Co-expression Network