XLOC_000148 (eif3bb)


Basic Information

Item Value
gene id XLOC_000148
gene name eif3bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11690360 ~ 11707665 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000261
GAAGAAGAGGAGCCTCCGTTCAGCGACGCGGAGGATTTTGAGGATGATGTCGAGGATGAAGAATTGTTGGAGGATGTTTTGAGAGACAGACCTCTGGAGGCTGATGGCATTGATTCGGTGGTCGTGGTGGACAACGTTCCTCAGGTGGGCCCTGAAAGACtggaaaaactaaaaaatgtgATCCATAAAATCTTCTCCAAATTCGGAAAAATCACAAACGAATTTTATCCTGAAGCAGCTGGGACCACCAAAGGGTACATCTTTCTGGAGTATGCTTCCCCTAACCAGGCTCTGGAAGCGGTGAAGAGTGCAGACGGTTACAAGCTGGACAAACAGCACACATTCAGAGTCAACCTCTTCACAGATTTTGACAAGTACATGAACATCAGTGATCTGTGGGAAACCCCTGAAAAACAGCCATTTAAAGACTTTGGCAACATGAGGCACTGGCTTGAGGATCCAGACTGTCGTGATCAATACAGTGTAATCTATGAGTCGGGAGAGCGAACCGCCATATTCTCGAATGACCCAAAGGAGCCGATACTGGTGGAAGAGAGAGCTCGCTGGACAGAGACTTATGTCCGCTGGTCTCCCAAAGGAGACCACCTCTCACCTTTCACCAAAGGGGAATTGCACTGTGGGGTGGAGAGAAGTTTAAGCAGATCCAGCGGTTCAGCCATCAGGGCGTCTCTCTCATCGACTTCTCCCCATGCGAAAGGTATGTGGTGACATTCAGCCCACTGATGGACACTAAAGAAGACCCTCAAGCCATCATCATCTGGGACATCCTGACCGGACAGAAGAAACGAGGCTTTCACTGTGAGAGTTCGGCACACTGGCCTATTTTTAAGTGGAGTCAAGATGGGAAGTTCTTTGCCAGAATGACTCAAGACACTCTGAGCATCTATGAAACCCCGTCAATGGGACTGCTTGATAAGAAGAGCTTGAAAATAAGTGGAATAAAAGATTTCTCTTGGTCACCGGGCGACAACATCATTGCCTTTTGGGTCCCAGAAGACAAGGACATTCCAGCCAGGGTTACACTCATGCATTTCCCTTCCCGTTCAGAGATTCGGGTGAGGAATTTGTTTAATGTGGTGGACTGTAAACTTCACTGGCAGCGGCAGGGCGATTACTTGTGTGTGAAAGTGGACCGAACGCCCAGAGGAAcacagGGTGTTGTCACTAACTTTGAGATTTTCCGCATGAGAGAAAAGCAGGTTCCTGTAGATGTGGTGGAAATGAAAGAGAGCATCATTGCATTTGCCTGGGAGCCCAATGGCAGTAGGTTTGCGGTATTACATGGAGAATCACCCAGAATAAATGCCTCATTTTATCACGTCAAGAGCAACGGAAAGATTGAGCTCATCAAGATGTTTGATAAGCAGCAGGCCAACAGTATTTTTTGGAGTCCACAGGGGCAGTTCATGGTACTGGCAGGTCTGCGAAGTATGAATGGTGCTCTTGCATTTGTGGACACGTCAGATTGTACCATTATGTACATCGCAGAGCATTACATGGCCTCTGATGTAGAATGGGACCCTACAGGCAGATATGTGGTGACTTCTGTTTCCTGGTGGAGCCACAAGGTGGACAACGCATACTGGCTTTGGACATTCCAGGGTCGTCTTCTGCAAAAGAACAACAAAGATAGATTCTGCCAATTGCTATGGAGACCACGCCCTCCTACTTTACTCAGTCAAGAGCAAATAAAGGCAATTAAGAAGGACCTCAAGAAGTATTCAAAAATCTTCGAGCAAAAGGACAGACTGAGCCAGTCCAAAGCTTCCAAGGAGTTAGTGGACAAACGTCGTCTGATGATGGAAGAGTACAGAAGGTACAAAGACAGTGCAATTCAGCTTTACAGCCAGCAGAGGGAGCTGCGCCTTCAACTCAGAGGAGGTGTGGACACAGATGAACTGGACAGTAATGTGGAAGACTGGGAGGAAGAAACAATTGAGTTTTTCATCAATGAGGAGATCATTAATCTCGGAGACCTGGAGTAA
>TCONS_00000262
AATTGTTGGAGGATGTTTTGAGAGACAGACCTCTGGAGGCTGATGGCATTGATTCGGTGGTCGTGGTGGACAACGTTCCTCAGGTGGGCCCTGAAAGACtggaaaaactaaaaaatgtgATCCATAAAATCTTCTCCAAATTCGGAAAAATCACAAACGAATTTTATCCTGAAGCAGCTGGGACCACCAAAGGGTACATCTTTCTGGAGTATGCTTCCCCTAACCAGGCTCTGGAAGCGGTGAAGAGTGCAGACGGTTACAAGCTGGACAAACAGCACACATTCAGAGTCAACCTCTTCACAGATTTTGACAAGTACATGAACATCAGTGATCTGTGGGAAACCCCTGAAAAACAGCCATTTAAAGACTTTGGCAACATGAGGCACTGGCTTGAGGATCCAGACTGTCGTGATCAATACAGTGTAATCTATGAGTCGGGAGAGCGAACCGCCATATTCTCGAATGACCCAAAGGAGCCGATACTGGTGGAAGAGAGAGCTGCGCTGGACAGAGACTTATGTCCGCTGGTCTCCCAAAGGAGACCACCTCTCACCTTTCACCAAAGGGGAATTGCACTGTGGGGTGGAGAGAAGTTTAAGCAGATCCAGCGGTTCAGCCATCAGGGCGTCTCTCTCATCGACTTCTCCCCATGCGAAAGGTATGTGGTGACATTCAGCCCACTGATGGACACTAAAGAAGACCCTCAAGCCATCATCATCTGGGACATCCTGACCGGACAGAAGAAACGAGGCTTTCACTGTGAGAGTTCGGCACACTGGCCTATTTTTAAGTGGAGTCAAGATGGGAAGTTCTTTGCCAGAATGACTCAAGACACTCTGAGCATCTATGAAACCCCGTCAATGGGACTGCTTGATAAGAAGAGCTTGAAAATAAGTGGAATAAAAGATTTCTCTTGGTCACCGGGCGACAACATCATTGCCTTTTGGGTCCCAGAAGACAAGGACATTCCAGCCAGGGTTACACTCATGCATTTCCCTTCCCGTTCAGAGATTCGGGTGAGGAATTTGTTTAATGTGGTGGACTGTAAACTTCACTGGCAGCGGCAGGGCGATTACTTGTGTGTGAAAGTGGACCGAACGCCCAGAGGAAcacagGGTGTTGTCACTAACTTTGAGATTTTCCGCATGAGAGAAAAGCAGGTTCCTGTAGATGTGGTGGAAATGAAAGAGAGCATCATTGCATTTGCCTGGGAGCCCAATGGCAGTAGGTTTGCGGTATTACATGGAGAATCACCCAGAATAAATGCCTCATTTTATCACGTCAAGAGCAACGGAAAGATTGAGCTCATCAAGATGTTTGATAAGCAGCAGGCCAACAGTATTTTTTGGAGTCCACAGGGGCAGTTCATGGTACTGGCAGGTCTGCGAAGTATGAATGGTGCTCTTGCATTTGTGGACACGTCAGATTGTACCATTATGTACATCGCAGAGCATTACATGGCCTCTGATGTAGAATGGGACCCTACAGGCAGATATGTGGTGACTTCTGTTTCCTGGTGGAGCCACAAGGTGGACAACGCATACTGGCTTTGGACATTCCAGGGTCGTCTTCTGCAAAAGAACAACAAAGATAGATTCTGCCAATTGCTATGGAGACCACGCCCTCCTACTTTACTCAGTCAAGAGCAAATAAAGGCAATTAAGAAGGACCTCAAGAAGTATTCAAAAATCTTCGAGCAAAAGGACAGACTGAGCCAGTCCAAAGCTTCCAAGGAGTTAGTGGACAAACGTCGTCTGATGATGGAAGAGTACAGAAGGTACAAAGACAGTGCAATTCAGCTTTACAGCCAGCAGAGGGAGCTGCGCCTTCAACTCAGAGGAGGTGTGGACACAGATGAACTGGACAGTAATGTGGAAGACTGGGAGGAAGAAACAATTGAGTTTTTCATCAATGAGGAGATCATTAATCTCGGAGACCTGGAGTAA
>TCONS_00000263
AGACCTCTGGAGGCTGATGGCATTGATTCGGTGGTCGTGGTGGACAACGTTCCTCAGGTGGGCCCTGAAAGACtggaaaaactaaaaaatgtgATCCATAAAATCTTCTCCAAATTCGGAAAAATCACAAACGAATTTTATCCTGAAGCAGCTGGGACCACCAAAGGGTACATCTTTCTGGAGTATGCTTCCCCTAACCAGGCTCTGGAAGCGGTGAAGAGTGCAGACGGTTACAAGCTGGACAAACAGCACACATTCAGAGTCAACCTCTTCACAGATTTTGACAAGTACATGAACATCAGTGATCTGTGGGAAACCCCTGAAAAACAGCCATTTAAAGACTTTGGCAACATGAGGCACTGGCTTGAGGATCCAGACTGTCGTGATCAATACAGTGTAATCTATGAGTCGGGAGAGCGAACCGCCATATTCTCGAATGACCCAAAGGAGCCGATACTGGTGGAAGAGAGAGCTCGCTGGACAGAGACTTATGTCCGCTGGTCTCCCAAAGGAGACCACCTCTCACCTTTCACCAAAGGGGAATTGCACTGTGGGGTGGAGAGAAGTTTAAGCAGATCCAGCGGTTCAGCCATCAGGGCGTCTCTCTCATCGACTTCTCC

Function

symbol description
eif3bb Predicted to enable RNA binding activity and translation initiation factor binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000074213

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000261 False 2006 mRNA 0.47 18 11690360 11707665
TCONS_00000262 False 1946 mRNA 0.47 17 11691722 11707665
TCONS_00000263 True 620 processed_transcript 0.49 5 11691748 11695168

Neighbor

gene id symbol gene type direction distance location
XLOC_000147 GNA12 coding upstream 21578 11659861 ~ 11668782 (+)
XLOC_000146 CU929311.1 coding upstream 220710 11469536 ~ 11469650 (+)
XLOC_000145 CU929103.1 coding upstream 309749 11380497 ~ 11380611 (+)
XLOC_000144 knstrn coding upstream 572430 11107688 ~ 11117930 (+)
XLOC_000143 NA coding upstream 903043 10780928 ~ 10787317 (+)
XLOC_000149 si:dkey-26i13.8 coding downstream 3561 11711226 ~ 11733130 (+)
XLOC_000150 chst12b coding downstream 28755 11736420 ~ 11737595 (+)
XLOC_000151 snx8b coding downstream 173894 11881559 ~ 11900420 (+)
XLOC_000152 NA coding downstream 225652 11933317 ~ 11933676 (+)
XLOC_000153 tspan5b coding downstream 269761 11977426 ~ 11994710 (+)
XLOC_000138 NA non-coding upstream 1009519 10645364 ~ 10680841 (+)
XLOC_000155 NA non-coding downstream 338827 12046492 ~ 12048509 (+)
XLOC_000166 CT033816.1 non-coding downstream 723663 12431328 ~ 12431442 (+)
XLOC_000167 BX511261.1 non-coding downstream 835694 12543359 ~ 12543475 (+)
XLOC_000168 NA non-coding downstream 965320 12672985 ~ 12677022 (+)

Expression


Co-expression Network