XLOC_014912 (mtdha)


Basic Information

Item Value
gene id XLOC_014912
gene name mtdha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32895379 ~ 32914305 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029420
AAATCGATTTGCTTTGAGACACAGCCATCATGTAAGAAGGCGAGAAATTTGAAAGCCACTCCCTCCTGCCGTTCACTCTATCCCGCTGCCAGCAGCAGCTCTCTATCCGTCTCTTAGTGCGGTTCTTATCCGCCTGTTTAAAATGGATCAGGACTGGCAAGCGTTAGCCACACAGCGAGCCGAATACGTGTCTGACCGTATCCGCGGGCTGCTGTCCTCCGGCCTGGACTTCCTCCGGGCCGAGCTCGGGGTTGATCTAGGGATTAAGCCGGAGAAGTGTCCGTCGTGGCTGATTCTGAGCGCGGCGCTGATCGGGCTGCTCTTGCTGGTGGTGCTCGCGGCCTGCGGACGGAGGAAACGCCGAGCGGCTCCCGTTACCGCGAGTCCTAGAAGCATCGCCGCCGCGGCTCCGGTGAAGACCAGCGCACCGCCGAAGACCGTGAAGACCGAGCCGAGCGAGCccaaaaagaagaacaaaaagaAAGCAGCCGATAAGAAGGCCCAGGCTAATGGACAAACAGTGGCTGAACCTCAGGAGGAAATCAAAGTCACTGGGGAGAAAAAGAAAGCACCTGCGCCAACTCCGACTAGAGCACCTGCGCCAGCTCCGACTAGAGCACCAGCTCCAGCTCCGACTCCAGCATCAGCTCCAGCTCCAGTTCCAGTTCCAgcaccaaaaccaaaacaaaaaccagCGCCAACACCAGCACAGCCACCTGCTGATACTAAGACCAAGAAGAACAAGAAGAAAGCAAAGCCAGAGTTGAAGACAGCCCAAGATGTTTCCTCCACTGATGGAAAGGAACCCGATGAAGCAGGTGCTTGGGAAACTAAGGTCAGCAATCGAGAGAAACGTCAGCAGCGAAAAAAAGAGAAGGGCCCTGGCGAAAGCTCTGGCAGTCCTGAAAGCGGAGATCGTGCCAGCATGAAGGTGGAGCAACCTGTGGTTACAGCCACAGCTGGCAACAAGAAGAACAAAGaGTCATCGCGTGTCAAGGCATCGAAGGGTGATGCCATCATTGCCCCAGTGACGTCTGCCTGGAATGATGTGAACTCTGTCAATGGTGGTGGTTTGACAGAGGTTCCAGTGAAGCAGGCcatccaatcaaacgctttaaaCAACGATAAATGGTCTGCTGGGAAAAAGACCTCAGGGCACAAGAACCGTGAAAACTCCACCTGGAAACAAGAGTCAGAGGGGCCATTGACTGGTTTGGATGGTAGAATTAAGGCTGAACCGAACCAAGTGAACTTGACAATGCTTGGACTGAATCCATCAGGTGGAGAGACTGGAAGTAAATCTAGCATTGAAATAGGAAAATGGGACAAGACCCCCGTGGTGGACAGTGAATGGTCCAGTTTCAATGGTCTTGGCTCTGTGGATCCGAGCTCAGACTGGAACGCTCCAAGTGAATTATGGGACAATTTCGAGGCCAAAGTAGATGCTTCTGCTCTGAAGGAGATACCAGTTTCTAAGCCGCTCGTGGAATCAAATGATGACAAAGACAAAGAAGATCCAGCAGGAGGTGGAAAGTCCAAgcgaagaaagaaaaagaagagacCGGAGGAAGAAGGATCAGCTGTTGAGGTGATTCCCGAGGTTTCTGCTCCGGCAGAGAAGAGTGTGACTGTCAAACCTCATCCTCCTCCTCATGTTCCAAAGGATGCTGGATCCAAGCAAAACATCCCTCCGCAGTCTTCACAAAAGAAATCTGATCAGAATTGGGAACCACCGAAGCAAGTTCAGAAGAAAAAAGTCAGAAGGGAAACATGAACCCGCGAATGACACCCAGAATAGCTTATGCAACTAGATTGTTTATGCAATAATTTCACAGTACAGAATTTTATACTGAGGAAATTTACTGtgcttttaacaaaaaaaaaatcaaatcaaaatgaaCTGGGTTAGAGAACTCGGcgcaaaaaaaaagagagagagataaaggcAAACTCTAGAGTAAATGGTGAGCAGTCCATGGGCTGGAACACTACTTATGTGCACTATTACGCGACACTGAGGTTTGTTAAGGAAAAAAACAGATCGTCCTTGATATCAGACAGGCTTACAGTGGAGCGAAAACATTCATGATCATTATTTTCCAATCTAATTTCGAAGCAAGAGTGAGGATCTACTTACTTCTCGGTCGATTACTGTCGCTGCTGTTACTGTTAGCGGCCACAAGGCGGCGCTGCGAGTCGGCGTCTCCTCCAGCAGCTCCGGGTGAAATACTGTAATGTCGTGATGGAAAACCAGAGAACGGTTTTATTACAGAGACCTTTTTTCCCAATGCTAGACCTATTTTCATAGTGCTTTTCTTCCGTCCTGAgtatataaatctatattttaCCCATATAATTGGGTACGTGAATCTTGAAGACGTAACAACTTCCCTTTTTAATCAACTCCAGTTGACTCTAATGCTTTATTTCCTGCAGACTAAAGTAGAAAAAGCCACGCCATATGTATAGAACTATAAGGGCTTTTTTTCTATGGTAAAACTCTTTGTAATTAATTGCACTGTGCTGAAGGTTGTAAAATACCATgtgtatttacttaatttttcttttcttgcACAATGTGAACATTTAATTTCTTTTGGTTCATGTTTGACTGAATAGATTAGTGTTTTTTTGATTGGGAAAGTCGATGATTTCTGATGATTAGCGCAGCTTTAATTCCACGACACTAAAACAGTCTCGGTATCAGGAATCTGTTGCCTTAATCTTGACTTAAGTAGTGCTTTTCTGTTCTCTTCCTCGagtcgttttttttattttttattattatttacaggtTTGGCTTTGCTGTTCATTTCAGATTTGATTGATGTCAGTGTTGCACTTGCATGAATTTAATATCCATTTATAATGATGAACAACGTCCTGATTCTCTGTCCACTCGTGCAAGTACCGCTCACTGTAAATAGGCTTTAAtgaatgatgacgatgatgatgatgatgaatggatgtttttaaatgcatattcaTATTTGGGTTGACTCGGTGGTGTTTTGCCCATGgtcggttttttttttttgtaaatttgactaGATGATGTGTTTTCTGAGGCGTCAGATTGCCTGCCTTAGGTTATCATTCTAGAGGTTACAAAATGATGTATTTCTACCGGTTTCTGGATTTGCGGATGATCATGTTTACTTCAGTCGATGCAATATTTCTATGTTGATTTGTTCAATAAAAAGAAGGCCGCTGTTTGAGCTTAGAGCTGGTGAttttgttcaataaaagaaaatgaagttTGAGCTCA
>TCONS_00029421
TATCCCGCTGCCAGCAGCAGCTCTCTATCCGTCTCTTAGTGCGGTTCTTATCCGCCTGTTTAAAATGGATCAGGACTGGCAAGCGTTAGCCACACAGCGAGCCGAATACGTGTCTGACCGTATCCGCGGGCTGCTGTCCTCCGGCCTGGACTTCCTCCGGGCCGAGCTCGGGGTTGATCTAGGGATTAAGCCGGAGAAGTGTCCGTCGTGGCTGATTCTGAGCGCGGCGCTGATCGGGCTGCTCTTGCTGGTGGTGCTCGCGGCCTGCGGACGGAGGAAACGCCGAGCGGCTCCCGTTACCGCGAGTCCTAGAAGCATCGCCGCCGCGGCTCCGGTGAAGACCAGCGCACCGCCGAAGACCGTGAAGACCGAGCCGAGCGAGCccaaaaagaagaacaaaaagaAAGCAGCCGATAAGAAGGCCCAGGCTAATGGACAAACAGTGGCTGAACCTCAGGAGGAAATCAAAGTCACTGGGGAGAAAAAGAAAGCACCTGCGCCAACTCCGACTAGAGCACCTGCGCCAGCTCCGACTAGAGCACCAGCTCCAGCTCCGACTCCAGCATCAGCTCCAGCTCCAGTTCCAGTTCCAgcaccaaaaccaaaacaaaaaccagCGCCAACACCAGCACAGCCACCTGCTGATACTAAGACCAAGAAGAACAAGAAGAAAGCAAAGCCAGAGTTGAAGACAGCCCAAGATGTTTCCTCCACTGATGGAAAGGAACCCGATGAAGGTGCTTGGGAAACTAAGGTCAGCAATCGAGAGAAACGTCAGCAGCGAAAAAAAGAGAAGGGCCCTGGCGAAAGCTCTGGCAGTCCTGAAAGCGGAGATCGTGCCAGCATGAAGGTGGAGCAACCTGTGGTTACAGCCACAGCTGGCAACAAGAAGAACAAAGaGTCATCGCGTGTCAAGGCATCGAAGGGTGATGCCATCATTGCCCCAGTGACGTCTGCCTGGAATGATGTGAACTCTGTCAATGGTGGTGGTTTGACAGAGGTTCCAGTGAAGCAGGCcatccaatcaaacgctttaaaCAACGATAAATGGTCTGCTGGGAAAAAGACCTCAGGGCACAAGAACCGTGAAAACTCCACCTGGAAACAAGAGTCAGAGGGGCCATTGACTGGTTTGGATGGTAGAATTAAGGCTGAACCGAACCAAGTGAACTTGACAATGCTTGGACTGAATCCATCAGGTGGAGAGACTGGAAGTAAATCTAGCATTGAAATAGGAAAATGGGACAAGACCCCCGTGGTGGACAGTGAATGGTCCAGTTTCAATGGTCTTGGCTCTGTGGATCCGAGCTCAGACTGGAACGCTCCAAGTGAATTATGGGACAATTTCGAGGCCAAAGTAGATGCTTCTGCTCTGAAGGAGATACCAGTTTCTAAGCCGCTCGTGGAATCAAATGATGACAAAGACAAAGAAGATCCAGCAGGAGGTGGAAAGTCCAAgcgaagaaagaaaaagaagagacCGGAGGAAGAAGGATCAGCTGTTGAGGTGATTCCCGAGGTTTCTGCTCCGGCAGAGAAGAGTGTGACTGTCAAACCTCATCCTCCTCCTCATGTTCCAAAGGATGCTGGATCCAAGCAAAACATCCCTCCGCAGTCTTCACAAAAGAAATCTGATCAGAATTGGGAACCACCGAAGCAAGTTCAGAAGAAAAAAGTCAGAAGGGAAACATGAACCCGCGAATGACACCCAGAATAGCTTATGCAACTAGATTGTTTATGCAATAATTTCACAGTACAGAATTTTATACTGAGGAAATTTACTGtgcttttaacaaaaaaaaaatcaaatcaaaatgaaCTGGGTTAGAGAACTCGGcgcaaaaaaaaagagagagagataaaggcAAACTCTAGAGTAAATGGTGAGCAGTCCATGGGCTGGAACACTACTTATGTGCACTATTACGCGACACTGAGGTTTGTTAAGGAAAAAAACAGATCGTCCTTGATATCAGACAGGCTTACAGTGGAGCGAAAACATTCATGATCATTATTTTCCAATCTAATTTCGAAGCAAGAGTGAGGATCTACTTACTTCTCGGTCGATTACTGTCGCTGCTGTTACTGTTAGCGGCCACAAGGCGGCGCTGCGAGTCGGCGTCTCCTCCAGCAGCTCCGGGTGAAATACTGTAATGTCGTGATGGAAAACCAGAGAACGGTTTTATTACAGAGACCTTTTTTCCCAATGCTAGACCTATTTTCATAGTGCTTTTCTTCCGTCCTGAgtatataaatctatattttaCCCATATAATTGGGTACGTGAATCTTGAAGACGTAACAACTTCCCTTTTTAATCAACTCCAGTTGACTCTAATGCTTTATTTCCTGCAGACTAAAGTAGAAAAAGCCACGCCATATGTATAGAACTATAAGGGCTTTTTTTCTATGGTAAAACTCTTTGTAATTAATTGCACTGTGCTGAAGGTTGTAAAATACCATgtgtatttacttaatttttcttttcttgcACAATGTGAACATTTAATTTCTTTTGGTTCATGTTTGACTGAATAGATTAGTGTTTTTTTGATTGGGAAAGTCGATGATTTCTGATGATTAGCGCAGCTTTAATTCCACGACACTAAAACAGTCTCGGTATCAGGAATCTGTTGCCTTAATCTTGACTTAAGTAGTGCTTTTCTGTTCTCTTCCTCGagtcgttttttttattttttattattatttacaggtTTGGCTTTGCTGTTCATTTCAGATTTGATTGATGTCAGTGTTGCACTTGCATGAATTTAATATCCATTTATAATGATGAACAACGTCCTGATTCTCTGTCCACTCGTGCAAGTACCGCTCACTGTAAATAGGCTTTAAtgaatgatgacgatgatgatgatgatgaatggatgtttttaaatgcatattcaTATTTGGGTTGACTCGGTGGTGTTTTGCCCATGgtcggttttttttttttgtaaatttgactaGATGATGTGTTTTCTGAGGCGTCAGATTGCCTGCCTTAGGTTATCATTCTAGAGGTTACAAAATGATGTATTTCTACCGGTTTCTGGATTTGCGGATGATCATGTTTACTTCAGTCGATGCAATATTTCTATGTTGATTTGTTCAATAAAAAGAAGGCCGCTGTTTGAGCTTAGAGCTGGTGAttttgttcaataaaagaaaatgaagttTGAGCTC

Function

symbol description
mtdha Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process; positive regulation of I-kappaB kinase/NF-kappaB signaling; and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).

GO:

id name namespace
GO:0045766 positive regulation of angiogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-615 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process; positive regulation of I-kappaB kinase/NF-kappaB signaling; and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).

Ensembl:

ensembl_id ENSDARG00000014159

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029420 False 3268 mRNA 0.45 12 32895379 32914305
TCONS_00029421 True 3186 mRNA 0.45 12 32895380 32914227

Neighbor

gene id symbol gene type direction distance location
XLOC_014911 laptm4b coding downstream 6621 32864577 ~ 32888758 (-)
XLOC_014910 si:dkey-284p5.3 coding downstream 46343 32840143 ~ 32849036 (-)
XLOC_014909 nt5c1aa coding downstream 90844 32766423 ~ 32804535 (-)
XLOC_014907 hpca coding downstream 184457 32622177 ~ 32710922 (-)
XLOC_014908 CR318628.1 coding downstream 245598 32649667 ~ 32649781 (-)
XLOC_014913 rrm2b coding upstream 2067 32916372 ~ 32928486 (-)
XLOC_014914 azin1b coding upstream 16171 32930476 ~ 32944050 (-)
XLOC_014915 klhl38a coding upstream 169761 33084066 ~ 33087246 (-)
XLOC_014916 trib1 coding upstream 285961 33200266 ~ 33212023 (-)
XLOC_014917 fam92a1 coding upstream 344267 33258572 ~ 33275035 (-)
XLOC_014711 CR382300.3 misc downstream 13166624 19728690 ~ 19728755 (-)
XLOC_014901 CR382336.1 non-coding downstream 564749 32330513 ~ 32330630 (-)
XLOC_014888 BX465206.1 non-coding downstream 1811406 31079326 ~ 31083973 (-)
XLOC_014885 BX927219.1 non-coding downstream 1929718 30962723 ~ 30965661 (-)
XLOC_014883 NA non-coding downstream 2060282 30831190 ~ 30835097 (-)
XLOC_014919 BX957357.1 non-coding upstream 458059 33372364 ~ 33372694 (-)
XLOC_014920 NA non-coding upstream 868478 33782783 ~ 33786703 (-)
XLOC_014924 CU928445.1 non-coding upstream 1063573 33977878 ~ 33977994 (-)
XLOC_014927 NA non-coding upstream 1273887 34188192 ~ 34230285 (-)
XLOC_014928 NA non-coding upstream 1367581 34281886 ~ 34283008 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_06974533_06985526 MTDHA coding CI01000054 null 6973352 ~ 6987037 (+)