CI01000054_06974533_06985526 (MTDHA)


Basic Information

Item Value
gene id CI01000054_06974533_06985526
gene name MTDHA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6973352 ~ 6987037 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_06974533_06985526.mRNA
GAATAAATACAAAGAAAGAAGTAAAAATATAGCTAAAGAAAATCACAGACAAAGCCACTTTTATAGATAGGTTGGTAACGCATAAAGGGTCCATGGATTTTTCCTTTTTAATATCAAGATTTTAGATTAAAGGTATTGATTTTTTCTCTCAATCCAACAGTGAGCGTTAAACTTGACAGAACTAAAACCATGACTCATTTTTTTTCAGAAGCTTCTCATTTGACTGACATCGTATTTGTTTTTCCTACTATGGGGTGAGATCTGTTTGGTTACAGACATTCTTCCAAATATCTTCCTTTGTGTTCAGCAGAACAAATAAACTCATACAGGTTTGAAACTACTTGAGAGTAAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATACCTTTAACTTGAGTGAACTCGGGTGCTCGGAACGCACTCAGGGTTGAGAGAACCGAGAACCAGATCTTATTAAGAACCGATTCAATTTTTCGCAGTTGATTAATTAATTACTTACTAGACAAAATGATGTGTAAGACAAAGGTGTATATACAAAATTATATGTAAGACTTTCGGTTACGTACATTTTATCTCGGAAATATATTCTTCCGCCGAATATACTCTTATCAGTGTTTCCTGAACTATTCAGCTCATCGCACAGTGCCACCAGCGCAGCGATTCCTGAATGAATGACTCTTAAGAGTCGGATCTTTTTAATGAATCAAAACCATTTATGAATCGGCCAGAGAATTAATCGAACCGTAAGTTATTGCTTTCGTTATGCACAATCTAAATGAAGCAAACATTGTGTTGTACCGTAGCTAAAAGCCCGTGAGACTTAAATCAGTTACTGACTGGTTATTCATACGACAACAAACTCAGATTGTGAGCTTTACTGTAAATAATCGAATGAAATATGTTACTACATGTTTATTTGTTTAGTATTTTATTAATAATAAACAGAAGCAATTATTGTCTATCCATAATATTGTATTTTGTACCTATTGTATTTATTTTTATGTGTTATCAGTGTTGTCTAGGTAGTCAGATCGATAGGTTGAGGCACAGCCATCATGTAAGAAGGCGAGAAATACTAAAGCCACTCCCTCCTGCCGTTCACTGTCTCCCGAGTCCCGCTGCCAGCAGCAGCTCACTATCCGTCTCTGCTTGCGGTTCTTGTCCGCCTGTTTAAAATGGACCAGGACTGGCGAACTTTAGCCACACAGCGAGCCGAATACGTGTCCGACCGTATCCGCTGGCTGCTGTCCTCCGGCCTGGATTTCCTCCGGGCCGAGCTGGGGGTTGATCTGGGGATAAAGCCGGAGCAGTATCCGTCGTGGCTGATTCTGAGCGCGGCGCTGTTCGGGCTGATTGTGCTGGTGGCGCTCGCGGCCTGTGGACGGAGGAAGCGCCGAGCGGTCCCTGTTACTGTGAGTCCCACCACCGCCGCCAAGACCCCGGTCAAGACCGCCCTGCCACCGAAACCTGTGAAGACCGAGCCGAGCGAACCGAAGAAGAAGAACAAAAAGAAAGCCTCCGACAAGCAGAAGGCCCAGGCGAATGGACAAACAGTGGCTGAACCTCAGCAGGAAATCAAAGTCACCGAGGAGAAAAAGAAACCCGCTCCTGCACCAGCACAAGCACCAACACCAGCACCAACACCAGCACAGCCACCTGCTGATGCAAAGACCAAGAAAAACAAGAAGAAACCAAAACCAGAGGTGAAGCCAACCCAAGATGTTTCCTCCACCGATGGCAAGGAACCTGATGAAGGTGCTTGGGAAACCAAGGTCAGTAATCGAGAGAAACGTCAGCAGCGCAAAAAAGAGAAGGGCCCTGGCGACAGCTCTGGGAGCCCTGAAGCTGGAGATCGTGCCAGCCAGAAGGTGGAGCAACCTGTGGTTACAGCCACAGCTGGCACCAAAAAGAACAAAGAGTCATCACGTGCCAAGGCTGCAAAGGGCGATGCCATCATAGCCCCAGTGACGTCTAACTGGAATGATGCAAACTCTGTTAATGGTGGAGGGTGGACGGATGTGCCTGTGAAGCCAGCACAAACAAGCGCTTTAAACAACGAGAAGTGGTCTGCTGGGAGAAAGACCCTTGGGCACAGAAACCGTGATAACACAACCTGGAAACAAGAGTCAGAAGGTCCATGGACTGGTTTGGAAGGTAGAATTAAGGCAGATCCAAACCCAGTGAACTTAACAATGCTTGGACTAAACACATCAGGTGGAGAGACTAAATCAAACATTGAAAAAGGGCAATGGGACAAAGTACCCACCGCTGACAATGAATGGTCCAGCTACAATGGTCTTGCCGCTGACCCGAGCTCAGACTGGAAACCTCCAGATGAGTTATGGGAGAATTATGAGCCCAAAGTTGATGCTCCTGCTTTGAAAGAGATTCCAGTTTCCAAGCCACTTGGGGAATCAAATGAAGACAACGACAAGACCGATCCTGCAGGTGGAAAATCCAAGAGACGAAAGAAAAAGAAGAGACCAGAGGAAGAAGGTTCAACCACTGAGGTGACTCAAGAAGGTTCTGCTCCTGCAGAGAAGAATGTGACTGTCAAGCTTCATCCTCCTCATGTTCCAAAGGATGAGGGATCCAAGCAAAACATCCCTCCACAGTCTACACAAAAGAAATCTGATCAGAACTGGGAACCACCGAAGCAAGTTCAGAAGAAAAAAGCCAGGAAAGAAACATGAATTGTGAATAACATTCAGGATAGCTTATGCAAATAGATTGTTTATGCAATAATTCCACAGTACAGAATTTTATACTGAATAAGTTTACTGTGCTTTTAAAAAAAAATCCAAAATAGAAACAAAACTGAGTTGAATGAACTTGGCAGAAAAAAAAAAGAAAAAAGAAAGAAAGAAAAATCTATAGAGTAAAGGTGAGCAGTCCATGGGCTGGAACACTACTTATGTGCACTATTATGCTACACTGAGGTTTGTTAGTATCAAACATGCTTTCAGTGGAGCAAAACATTCATGATCATTATTTTTCAACTGCTACTAAACTGATTTTGAACTTGGAGGGTTGAAATCATTTGGGAAATCTACTTTCTTTCCATCTATTAATGTTCCTGTGGCACTTTGGTACTGCTGAATTGCACTTTGGTGTCCAGCAGTTTCTGAAGTGTTGCAGTTACTGTTAGAAACCACAGAGAGGCGCTGTGAGCCGGCGTCTCCTCCAGCAGTACTTCTGTGAGGTGAAATACTGTAATCCTGTAGACCGCTGTGGTGGACAACTAAAGAACGGTTATATTACAGAGAATTTTTTTAATGCTAAACCTATTTTCTTAAAGCTTTTCTTCCGTCCTGAGTATATATTTTACCCATATAACTGAGTATGTGGATCTTGGAGATGTTTAGAATTACAACTCTTCCCTTTTTAATCAACTACTAGTTGACTCTAATGCTTTATTTCCTGCAAACTAAAGTAGAAAAAGCCACGCCATATGTATAGAACTATAAGGGCTTTTTTTCTATGGTAAAACTCTTTGTAATTGCACTGTGCTGAAGGTTGTAAAATACCATGTGTATTTACTTTTTTTGTTTCTTGCACAATGTGAACATTAAATTTTTGTTCATGTTTGTTTTGACTGAGTAAGTTAGTAGGTTTATGTGATTTTGATTGGGAAAAGTTGATGATGATTAGCGCAGCTTTAATTCCATGACACTAAAACAGTATCAGTATCAGGAATCTGTTGCCTTAATCTATACTTAGTAGTGTATGCTTTCTGTTCTCTTCCTCATTTTCAAGTCTTTTTAGCAGGTTTTAACGTTACCTTTCCTTTCAGATTTGATTGATGTCAGTGTTGCACTTGCATGAACTTAACCATTTATATAGTGATGAACAACGTCCTGATTCTCTGTCCACTCGTGCAAGTACCACTCACTGTAAATAGGCTTTAATGAATGATGATGATGATGATGATGATGATGATGAATGGATGTGGGGTGGGGGTGGGGGGAACTGCGGGTTTAAAATGCATATTCATATTTGGGTTGACTTAGTGGTGTTTTGCCCATGGTCGTTTTGTAAATTTCAGTAGATCATGTGTTTCTGAGGCACTCTGGTCTAGCATCAGATGCCTGCCTTAGTTTATCATTCTAGAGGTTACTCAAACTATGTATTTCTACAAATTTATGGATTTAAGAATGATCATGTTTACTTAAGTCAATGCAATATTTCTATGTTGATTTGTTAA

Function

symbol description
mtdha Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of apoptotic process; positive regulation of I-kappaB kinase/NF-kappaB signaling; and positive regulation of angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human MTDH (metadherin).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_06974533_06985526.mRNA True 4210 mRNA 0.41 12 6973352 6987037

Neighbor

gene id symbol gene type direction distance location
CI01000054_06967494_06972758 RRM2B coding upstream 476 6967014 ~ 6972876 (+)
CI01000054_06962442_06966056 AZIN1B coding upstream 7114 6962333 ~ 6966238 (+)
CI01000054_06865381_06869404 KLHL38A, KLHL38 coding upstream 103410 6865381 ~ 6869942 (+)
CI01000054_06795526_06796596 TRIB1 coding upstream 176708 6795526 ~ 6796644 (+)
CI01000054_06789505_06789810 NA coding upstream 183406 6788362 ~ 6789946 (+)
CI01000054_06990478_06999311 LAPTM4B coding downstream 3368 6990405 ~ 6999311 (+)
CI01000054_07011099_07011947 NA coding downstream 23986 7011023 ~ 7012098 (+)
CI01000054_07019424_07021726 NA coding downstream 32387 7019424 ~ 7022311 (+)
CI01000054_07040367_07056299 5NT1A, NT5C1AA coding downstream 53330 7040367 ~ 7057570 (+)
CI01000054_07119711_07124720 HPCA.S, HPCAL1, HPCA, HPCAL1.L coding downstream 132674 7119711 ~ 7124770 (+)
G232883 NA non-coding upstream 27519 6945630 ~ 6945833 (+)
G232882 NA non-coding upstream 27756 6944556 ~ 6945596 (+)
G232876 NA non-coding upstream 56072 6915946 ~ 6917280 (+)
G232871 NA non-coding upstream 83203 6889921 ~ 6890149 (+)
G232842 NA non-coding upstream 132289 6839625 ~ 6841063 (+)
G232886 NA non-coding downstream 16574 7003611 ~ 7003974 (+)
G232848 NA non-coding downstream 20074 7007111 ~ 7009223 (+)
G232914 NA non-coding downstream 80377 7067414 ~ 7067653 (+)
G232942 NA non-coding downstream 189302 7176339 ~ 7176575 (+)
G232944 NA non-coding downstream 191211 7178248 ~ 7178633 (+)
G232870 NA other upstream 84849 6887912 ~ 6888503 (+)
G232659 NA other upstream 597458 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 666492 6305908 ~ 6312163 (+)
G232558 NA other upstream 931489 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 1348677 5608457 ~ 5634804 (+)
G233024 NA other downstream 580486 7567523 ~ 7609893 (+)
G233306 NA other downstream 1317562 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1318900 8325126 ~ 8329716 (+)
G235560 NA other downstream 3401099 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 4577939 11564820 ~ 11568999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014912 mtdha coding NC_007130.7 CM002903.2 32895379 ~ 32914305 (-)