G232848


Basic Information

Item Value
gene id G232848
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7007111 ~ 7009223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU264241
TTTAAATCTTATCAACTTAGACATATAAATTACCTACTAATTAAAAAGTAACAGTTAACAGGGAAAGTTACAGTCCAAACAAAGTATAAGATCACATCAGTTCAGCCAGTAAAAAAAGAACTGATGCATGAATACACACCAGGGTCAATGATGGCCAATGTGCACACCCTGTAGTATTTACCACAGGCTGTACCGAGCTCAATGTTGTTTCCACTGTAATGATGGACTCCGGTTTTGGCCAACATAGCGTAGTACTCAATCTCAGATTTCCTGGAAAAAAAAAAAAATATCATGAATCATTAATATTATCCTCAACCCCCACAAAACCGTCTACGAGGTGACAGACTACTCGCATGGTGATAGCAGATGGACAGAGAAATATACAAACAGGTAAACGGCACACACCTCAGAGCAGGACAGTTGTTGGCCAGGATTACCAGCTTGGCTTTTCCTTGGCGAATCATTTTCTGAGACTGCTTGTATCCGAGAACGTATTTACCGCTCTTCATCACAAGCTGCAGTCTGGAGTTGATGGACTCCAGGGACTTTTTCCGTTTTCTTTGCGGCCACCATTTTTCCTGATTAGTCCGATCTGGCCAACCTGAATACAGAGGAGCGATAAATCAAGATCTACACTTTGAAAAATTATGCGTTCGTACTCTTCGTGAAACTTTTAAAAGGAATATTTTAATAATTTTCAACAGAGCCGCGCTCACCTCCTGATCACACCAAGATGGCCTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU264241 True 742 lncRNA 0.41 2 7007111 7009223

Neighbor

gene id symbol gene type direction distance location
CI01000054_06990478_06999311 LAPTM4B coding upstream 7800 6990405 ~ 6999311 (+)
CI01000054_06974533_06985526 MTDHA coding upstream 20074 6973352 ~ 6987037 (+)
CI01000054_06967494_06972758 RRM2B coding upstream 34235 6967014 ~ 6972876 (+)
CI01000054_06962442_06966056 AZIN1B coding upstream 40873 6962333 ~ 6966238 (+)
CI01000054_06865381_06869404 KLHL38A, KLHL38 coding upstream 137169 6865381 ~ 6869942 (+)
CI01000054_07011099_07011947 NA coding downstream 1800 7011023 ~ 7012098 (+)
CI01000054_07019424_07021726 NA coding downstream 10201 7019424 ~ 7022311 (+)
CI01000054_07040367_07056299 5NT1A, NT5C1AA coding downstream 31144 7040367 ~ 7057570 (+)
CI01000054_07119711_07124720 HPCA.S, HPCAL1, HPCA, HPCAL1.L coding downstream 110488 7119711 ~ 7124770 (+)
CI01000054_07145831_07153505 NA coding downstream 136282 7145505 ~ 7154654 (+)
G232886 NA non-coding upstream 3137 7003611 ~ 7003974 (+)
G232883 NA non-coding upstream 61278 6945630 ~ 6945833 (+)
G232882 NA non-coding upstream 61515 6944556 ~ 6945596 (+)
G232876 NA non-coding upstream 89831 6915946 ~ 6917280 (+)
G232871 NA non-coding upstream 116962 6889921 ~ 6890149 (+)
G232914 NA non-coding downstream 58191 7067414 ~ 7067653 (+)
G232942 NA non-coding downstream 167116 7176339 ~ 7176575 (+)
G232944 NA non-coding downstream 169025 7178248 ~ 7178633 (+)
G232948 NA non-coding downstream 172679 7181902 ~ 7182155 (+)
G232907 NA non-coding downstream 208916 7218139 ~ 7219649 (+)
G232870 NA other upstream 118608 6887912 ~ 6888503 (+)
G232659 NA other upstream 631217 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 700251 6305908 ~ 6312163 (+)
G232558 NA other upstream 965248 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 1382436 5608457 ~ 5634804 (+)
G233024 NA other downstream 558300 7567523 ~ 7609893 (+)
G233306 NA other downstream 1295376 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1296714 8325126 ~ 8329716 (+)
G235560 NA other downstream 3378913 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 4555753 11564820 ~ 11568999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002682 NA misc CM030136.1 CM030136.1 26267052 ~ 26279621 (-)