Gene
RNA
| Item | Value |
|---|---|
| gene id | G232882 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 6944556 ~ 6945596 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU264277 | True | 1041 | lncRNA | 0.31 | 1 | 6944556 | 6945596 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_06865381_06869404 | KLHL38A, KLHL38 | coding | upstream | 74614 | 6865381 ~ 6869942 (+) |
| CI01000054_06795526_06796596 | TRIB1 | coding | upstream | 147912 | 6795526 ~ 6796644 (+) |
| CI01000054_06789505_06789810 | NA | coding | upstream | 154610 | 6788362 ~ 6789946 (+) |
| CI01000054_06759472_06761310 | NA | coding | upstream | 183246 | 6758811 ~ 6761310 (+) |
| CI01000054_06756071_06757443 | NA | coding | upstream | 187042 | 6755809 ~ 6757514 (+) |
| CI01000054_06962442_06966056 | AZIN1B | coding | downstream | 16737 | 6962333 ~ 6966238 (+) |
| CI01000054_06967494_06972758 | RRM2B | coding | downstream | 21418 | 6967014 ~ 6972876 (+) |
| CI01000054_06974533_06985526 | MTDHA | coding | downstream | 27756 | 6973352 ~ 6987037 (+) |
| CI01000054_06990478_06999311 | LAPTM4B | coding | downstream | 44809 | 6990405 ~ 6999311 (+) |
| CI01000054_07011099_07011947 | NA | coding | downstream | 65427 | 7011023 ~ 7012098 (+) |
| G232876 | NA | non-coding | upstream | 27276 | 6915946 ~ 6917280 (+) |
| G232871 | NA | non-coding | upstream | 54407 | 6889921 ~ 6890149 (+) |
| G232842 | NA | non-coding | upstream | 103493 | 6839625 ~ 6841063 (+) |
| G232827 | NA | non-coding | upstream | 112594 | 6785451 ~ 6831962 (+) |
| G232805 | NA | non-coding | upstream | 209184 | 6735063 ~ 6735372 (+) |
| G232883 | NA | non-coding | downstream | 34 | 6945630 ~ 6945833 (+) |
| G232886 | NA | non-coding | downstream | 58015 | 7003611 ~ 7003974 (+) |
| G232848 | NA | non-coding | downstream | 61515 | 7007111 ~ 7009223 (+) |
| G232914 | NA | non-coding | downstream | 121818 | 7067414 ~ 7067653 (+) |
| G232942 | NA | non-coding | downstream | 230743 | 7176339 ~ 7176575 (+) |
| G232870 | NA | other | upstream | 56053 | 6887912 ~ 6888503 (+) |
| G232659 | NA | other | upstream | 568662 | 6374850 ~ 6375894 (+) |
| CI01000054_06305908_06312122 | NA | other | upstream | 637696 | 6305908 ~ 6312163 (+) |
| G232558 | NA | other | upstream | 902693 | 5993660 ~ 6041863 (+) |
| CI01000054_05608892_05634793 | RNF19B | other | upstream | 1319881 | 5608457 ~ 5634804 (+) |
| G233024 | NA | other | downstream | 621927 | 7567523 ~ 7609893 (+) |
| G233306 | NA | other | downstream | 1359003 | 8304599 ~ 8304949 (+) |
| CI01000054_08325126_08329621 | HPCAL4, VSNL1, VSNL1.S | other | downstream | 1360341 | 8325126 ~ 8329716 (+) |
| G235560 | NA | other | downstream | 3442540 | 10388136 ~ 10392378 (+) |
| CI01000054_11564820_11568338 | S100V2 | other | downstream | 4619380 | 11564820 ~ 11568999 (+) |
