XLOC_015038


Basic Information

Item Value
gene id XLOC_015038
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 45689237 ~ 45690415 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029799
ACGTGCACGTGAGTAGCCTATACGCGCGTTCTCATGCTAACGACACGTGTCTGGTAATTAACAAATGTCTCCTTGTGCCGTGAATCTCTTCCAATTCTTTTTCTCCTCGTCTGTTTCTCACTGTGAGACAAGAACACCGCAATCACTCACATCCGAgtgctttaaatataaataatgagcCGATTTCCATTAACACCGGGCGGCCGCAGAGCCTCACACAGACCCGCAGAGGAGACTCGGAGACCCGCAGAGGCTGGAGAGACACGGGGCTGGATGTGTTCAGTCTGCAGCTCAGCTGGTCCATATTGACTCGCTTttcatgacatggtgtgttattctgctggaagtagccatagaagatggagacactgctcataaagggatggacatggtcagcagcaatactcaggtaggctgtggcgttgacacgatgcttaattagtattaatgagcccaaagtgtgccaagaaaatctcccccacaccattacaccaccaccagcagcttgaaccgctgatacaaggcaggatggatccatataTAATAAAGCGTACTTGCAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029799 True 561 lncRNA 0.49 2 45689237 45690415

Neighbor

gene id symbol gene type direction distance location
XLOC_015037 trps1 coding downstream 38243 45375669 ~ 45650994 (-)
XLOC_015036 FP340497.1 coding downstream 444529 45157502 ~ 45244708 (-)
XLOC_015035 NA coding downstream 682180 45003801 ~ 45007057 (-)
XLOC_015034 csmd3a coding downstream 733527 44123618 ~ 44955710 (-)
XLOC_015033 rad21b coding downstream 1597832 44068250 ~ 44091405 (-)
XLOC_015039 eif3hb coding upstream 165756 45856171 ~ 45960191 (-)
XLOC_015040 si:ch211-153f2.3 coding upstream 293232 45983647 ~ 45985989 (-)
XLOC_015041 krit1 coding upstream 300639 45991054 ~ 46018152 (-)
XLOC_015042 nup153 coding upstream 328898 46019313 ~ 46058963 (-)
XLOC_015043 ptdss1b coding upstream 376474 46066889 ~ 46091605 (-)
XLOC_014711 CR382300.3 misc downstream 25960482 19728690 ~ 19728755 (-)
XLOC_015031 NA non-coding downstream 1788185 43897940 ~ 43901052 (-)
XLOC_015028 NA non-coding downstream 1977944 43704915 ~ 43711293 (-)
XLOC_015024 NA non-coding downstream 2146669 43429805 ~ 43542568 (-)
XLOC_015045 NA non-coding upstream 722198 46412613 ~ 46420558 (-)
XLOC_015047 NA non-coding upstream 801168 46491583 ~ 46492033 (-)
XLOC_015051 NA non-coding upstream 1308846 46999261 ~ 47173408 (-)
XLOC_015054 CU929178.2 non-coding upstream 1709774 47400189 ~ 47400307 (-)
XLOC_015055 CU929178.1 non-coding upstream 1725175 47415590 ~ 47416405 (-)

Expression


Co-expression Network