XLOC_015033 (rad21b)


Basic Information

Item Value
gene id XLOC_015033
gene name rad21b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 44068250 ~ 44091405 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029610
GggcgtcgccattttgtttgttttagtgaaACTGTACAGTGGGAGGAGAGTGAAAGCTACCATAGAAACGGTTGCTAAATACGGAAAGCTACGATAGGACCGTTCCGCGTTCAGCGTCCCCCACCACCTCAGTGTGAGACGGTGCCGGGACGATGTTTTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTCGCCAAAATCTGGCTGGCGGCCCACTGGGATAAGAAGCTGACCAAAGCACATGTGTTTGAGTGCAATCTGGAGAGCAGCGTGGAGAGCATCATCTCTCCAAAGGTAAAAATGGCTCTCCGTACTTCTGGTCACTTACTGCTGGGCGTGGTGAGGATCTACCACAGAAAAGCCAAGTACCTGCTGGCAGACTGCAATGAGGCTTTTATTAAGATTAAAATGGCTTTTCGCCCAGGTGTGGTCGACCTGCCTGAGGAGAATCGCGAAGCCGCGTACAACGCCATCACGTTACCAGAGGAGTTTCACGACTTCGATCAACCTCTTCCAGACCTTGACGACATTGACGTTGCTCAACAGTTCACCCTGAATCAGTCCCGTGTGGAGGAGATCACCATGAGAGAAGAAGTGGGAAACCTCAGTCTCCTGCAAGAGAATGATTTTGCTGATTTTGGGATGGACGACCGGGAGATGATGCGGGAGGAAGGTGCATTTGAAGTGGACATCATCCACGGAGCATCTGCATCAAACCTGCTGCTGGAGTCAGAGTCCAGTAGCGTACAGATCGCTGACAAAACCAACCACCTGGAGTACGACCAGTACAAGGATGACTTTGGAGACAATCCAATGGAGAGCACTGAAGGAGGCATGCTGGTGGACAAGCTGCTCAGCAATGAGGACGGAGGGGGTATTTTTGACGATCCTCCAGCCATACCTGAAGGTGTGATGATGCCCCAAGACCACGGTGCAGATGACGACGATGATTTTGACAACCTTTCACCTGCAGGAGGTCCAGACAGCCCTGATTCTGGCCCTGTGGAGCCTTTGCCCACCATGACAGACCAGACTGAACAGACCACACTAGTCCACAATGAAGAGGAGGCCTTTGCTTTGGAGCCCATCGACATCACAGTGAAGGAAACCAAGGCGAAAAGGAAGAGGAAGCTGATTGTGGACAGTGTGAAGGAGCTGGACAGTAAGACCATCCGTGCCCAGCTGAGTGACTACTCTGACATTGTGACCACGCTGGATCTGGCTCCCCCCACCAAGAAGCTGATGATGTGGAAGGAAACCGGTGGCGTGGAGAAGCTCTTTTCTCTGCCAGCTCAGCCCCTCTGGAACAGCAGACTGCTCAAGATGTTCACTCGCTGCCTGACCCCTCTGGTGCCCGATGagctgaggaagaggaggaagggTGGAGAAGCAGACAGTCTGGATGAGTTCCTTAAAGACCTGGAAAACCCTGAAGTGCCACGAGAAGAAGCCCTGAATCAGCAAAGAGACATCATCGATCAGACCATCTTGGAGGAGCCCAGTGTTTTGCAGGCTTCAGCCATGGAGGGCAGTCGCACCACCCTCGACGAGTCCGTCATGCCTCCTCCATCTGGACCCCGCGGACAAAAGCGCAAAGCTCAGGACGGAGAGCCTGCCTTGCCTATGCTGGAGGATGATCGTTCCTCCATTGTGTCTACGCAACACGTGAGCCTGCCACAGGTGGAGCTTCCTCCTGAAGAACCAGTCAACATCGCACAGCTCATCCCTGATCTCGACCTGATAGGAGAGAAGAGCAAAGACAAGAAGGATGACGATGATGAAGAGGAGGAGGAAGAAGGTCAGAGCGGGGACCAGGATCAGGAGGAAAGGAGGTGGAACAAGAGGACGCAGCAGATGCTTCACGGTTTACAGAGAGTCATTGCTAAGACTGGAGCGGAATCCATCAGCTTGCTGGACCTGTGCAGAAACAACAACAAGAAGCAAGCGGCTGCTAAGTTCTACAGCTTTCTGGTGCTAAAGAAACAGCAGGCGGTGGAGCTGCGACAGGACGAGCCCTACAGCGACATCATCGCCACCCCGGGCCCCAGATTTCACATCATATAGACTCTTTACAGTCAACAGATTTGATTCTTTTTAATGGTTTTGTTTGTATATGATGTGTTATGTGTATCCGTGCATgtgcatttttcacaacacaGGCTCACAGGATACGCACCCCTGTCTATtattctggagagcgcaaatcaTGTAGCCAGAGGTAAAATAAA
>TCONS_00029611
ATGTTTTACGCCCACTTTGTCCTCAGCAAACGTGGGCCGCTCGCCAAAATCTGGCTGGCGGCCCACTGGGATAAGAAGCTGACCAAAGCACATGTGTTTGAGTGCAATCTGGAGAGCAGCGTGGAGAGCATCATCTCTCCAAAGGTAAAAATGGCTCTCCGTACTTCTGGTCACTTACTGCTGGGCGTGGTGAGGATCTACCACAGAAAAGCCAAGTACCTGCTGGCAGACTGCAATGAGGCTTTTATTAAGATTAAAATGGCTTTTCGCCCAGGTGTGGTCGACCTGCCTGAGGAGAATCGCGAAGCCGCGTACAACGCCATCACGTTACCAGAGGAGTTTCACGACTTCGATCAACCTCTTCCAGACCTTGACGACATTGACGTTGCTCAACAGTTCACCCTGAATCAGTCCCGTGTGGAGGAGATCACCATGAGAGAAGAAGTGGGAAACCTCAGTCTCCTGCAAGAGAATGATTTTGCTGATTTTGGGATGGACGACCGGGAGATGATGCGGGAGGAAGGTGCATTTGAAGTGGACATCATCCACGGAGCATCTGCATCAAACCTGCTGCTGGAGTCAGAGTCCAGTAGCGTACAGATCGCTGACAAAACCAACCACCTGGAGTACGACCAGTACAAGGATGACTTTGGAGACAATCCAATGGAGAGCACTGAAGGAGGCATGCTGGTGGACAAGCTGCTCAGCAATGAGGACGGAGGGGGTATTTTTGACGATCCTCCAGCCATACCTGAAGGTGTGATGATGCCCCAAGACCACGGTGCAGATGACGACGATGATTTTGACAACCTTTCACCTGCAGGAGGTCCAGACAGCCCTGATTCTGGCCCTGTGGAGCCTTTGCCCACCATGACAGACCAGACTGAACAGACCACACTAGTCCACAATGAAGAGGAGGCCTTTGCTTTGGAGCCCATCGACATCACAGTGAAGGAAACCAAGGCGAAAAGGAAGAGGAAGCTGATTGTGGACAGTGTGAAGGAGCTGGACAGTAAGACCATCCGTGCCCAGCTGAGTGACTACTCTGACATTGTGACCACGCTGGATCTGGCTCCCCCCACCAAGAAGCTGATGATGTGGAAGGAAACCGGTGGCGTGGAGAAGCTCTTTTCTCTGCCAGCTCAGCCCCTCTGGAACAGCAGACTGCTCAAGATGTTCACTCGCTGCCTGACCCCTCTGGTGCCCGATGagctgaggaagaggaggaagggTGGAGAAGCAGACAGTCTGGATGAGTTCCTTAAAGACCTGGAAAACCCTGAAGTGCCACGAGAAGAAGCCCTGAATCAGCAAAGAGACATCATCGATCAGACCATCTTGGAGGAGCCCAGTGTTTTGCAGGCTTCAGCCATGGAGGGCAGTCGCACCACCCTCGACGAGTCCGTCATGCCTCCTCCATCTGGACCCCGCGGACAAAAGCGCAAAGCTCAGGACGGAGAGCCTGCCTTGCCTATGCTGGAGGATGATCGTTCCTCCATTGTGTCTACGCAACACGTGAGCCTGCCACAGGTGGAGCTTCCTCCTGAAGAACCAGTCAACATCGCACAGCTCATCCCTGATCTCGACCTGATAGGAGAGAAGAGCAAAGACAAGAAGGATGACGATGATGAAGAGGAGGAGGAAGAAGGTCAGAGCGGGGACCAGGATCAGGAGGAAAGGAGGTGGAACAAGAGGACGCAGCAGATGCTTCACGGTTTACAGAGAGTCATTGCTAAGACTGGAGCGGAATCCATCAGCTTGCTGGACCTGTGCAGAAACAACAACAAGAAGCAAGCGGCTGCTAAGTTCTACAGCTTTCTGGTGCTAAAGAAACAGCAGGCGGTGGAGCTGCGACAGGACGAGCCCTACAGCGACATCATCGCCACCCCGGGCCCCAGATTTCACATCATATAG

Function

symbol description
rad21b Predicted to enable chromatin binding activity. Predicted to be involved in mitotic sister chromatid cohesion; replication-born double-strand break repair via sister chromatid exchange; and synaptonemal complex assembly. Predicted to act upstream of or within sister chromatid cohesion. Predicted to be located in nucleus. Predicted to be part of nuclear meiotic cohesin complex and nuclear mitotic cohesin complex. Predicted to be active in synaptonemal complex. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 4. Orthologous to human RAD21 (RAD21 cohesin complex component).

GO:

id name namespace
GO:0051177 meiotic sister chromatid cohesion biological_process
GO:1990414 replication-born double-strand break repair via sister chromatid exchange biological_process
GO:0007062 sister chromatid cohesion biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0007130 synaptonemal complex assembly biological_process
GO:0000795 synaptonemal complex cellular_component
GO:0034990 nuclear mitotic cohesin complex cellular_component
GO:0034991 nuclear meiotic cohesin complex cellular_component
GO:0008278 cohesin complex cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-223 Predicted to enable chromatin binding activity. Predicted to be involved in mitotic sister chromatid cohesion; replication-born double-strand break repair via sister chromatid exchange; and synaptonemal complex assembly. Predicted to act upstream of or within sister chromatid cohesion. Predicted to be located in nucleus. Predicted to be part of nuclear meiotic cohesin complex and nuclear mitotic cohesin complex. Predicted to be active in synaptonemal complex. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 4. Orthologous to human RAD21 (RAD21 cohesin complex component).

Ensembl:

ensembl_id ENSDARG00000035655

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029610 False 2230 mRNA 0.52 14 44068250 44091405
TCONS_00029611 True 1914 mRNA 0.53 13 44068414 44089509

Neighbor

gene id symbol gene type direction distance location
XLOC_015032 uqcrb coding downstream 2669 44049501 ~ 44065581 (-)
XLOC_015031 NA coding downstream 167198 43897940 ~ 43901052 (-)
XLOC_015030 klhl43 coding downstream 248640 43790932 ~ 43819610 (-)
XLOC_015029 ppt1 coding downstream 310682 43736269 ~ 43757568 (-)
XLOC_015028 NA coding downstream 356957 43704915 ~ 43711293 (-)
XLOC_015034 csmd3a coding upstream 32213 44123618 ~ 44955710 (-)
XLOC_015035 NA coding upstream 912396 45003801 ~ 45007057 (-)
XLOC_015036 FP340497.1 coding upstream 1066097 45157502 ~ 45244708 (-)
XLOC_015037 trps1 coding upstream 1284264 45375669 ~ 45650994 (-)
XLOC_015038 NA coding upstream 1597832 45689237 ~ 45690415 (-)
XLOC_014711 CR382300.3 misc downstream 24339495 19728690 ~ 19728755 (-)
XLOC_015024 NA non-coding downstream 525682 43429805 ~ 43542568 (-)
XLOC_015023 NA non-coding downstream 785452 43272241 ~ 43282798 (-)
XLOC_015022 NA non-coding downstream 816500 43250524 ~ 43251750 (-)
XLOC_015045 NA non-coding upstream 2321208 46412613 ~ 46420558 (-)
XLOC_015047 NA non-coding upstream 2400178 46491583 ~ 46492033 (-)

Expression


Co-expression Network