XLOC_015032 (uqcrb)


Basic Information

Item Value
gene id XLOC_015032
gene name uqcrb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 44049501 ~ 44065581 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029603
ACGTATCCCACAACCCTGTGCGTTTCTCTCAGAGAACAAAAATGGCGGCGAGGGCACCAGTTGCTGCATCCGGCAGGTTCGTGGATGTCTTCAGGAAATGGTACTACAATGCGTGCGGGTTCAACAAACTGGGCCTGATGCGGGACGACACCATCGATGAGGGCAGTGATGTGAAAGAGGCTGTTCGTCGTCTTCCAGAGCCACTTTACAATGAGAGGGTTTTCCGCCTCAAGAGAGCCATGGATCTTTCCATGAAGCACCAGATCCTTCCCAAAGACCAGTGGACGAAATTTGAGCAGGATGTGAAGTACCTGGAGCCGTACCTGCAGGAGGTGATCCGTGAAAGGAAAGAGAAAGAGGAGTGGGATAAGAAATAGGAAGAGCGTGATGACGATGATCAAGCTCTTCTTTGCTGCGATGAAAGCCATTGCAGCGGTCTCTAATCAAGGGAGAAAAGTTATTGGGAATATTTAATAGGCTCGTTCACTGCAGAAATACATTCtgatgattaaattaataaaattagtcAATTATCGTC
>TCONS_00029604
AAATGTTGTTCGATTTGTATTAGCGTTATGTGAAACTgtgatttaatatatttgttttcatcAATTTGCTGCATCCGGCAGGTTCGTGGATGTCTTCAGGAAATGGTACTACAATGCGTGCGGGTTCAACAAACTGGGCCTGATGCGGGACGACACCATCGATGAGGGCAGTGATGTGAAAGAGGCTGTTCGTCGTCTTCCAGAGCCACTTTACAATGAGAGGGTTTTCCGCCTCAAGAGAGCCATGGATCTTTCCATGAAGCACCAGATCCTTCCCAAAGACCAGTGGACGAAATTTGAGCAGGATGTGAAGTACCTGGAGCCGTACCTGCAGGAGGTGATCCGTGAAAGGAAAGAGAAAGAGGAGTGGGATAAGAAATAGGAAGAGCGTGATGACGATGATCAAGCTCTTCTTTGCTGCGATGTCTGGTATTCttgtatttaaaagaaaatgtattatgtGATGAGTCCTTATTAAAATTTCCTTTCTGACAAAAGC
>TCONS_00029605
GAAATCAGTGATGAAGAAGCAGTTCAGATCCAAGTGCCTTCAGTTCTTCCTGCAGACTCTTTCACACTCAGACCGTATGTGGAGAAATCAGAAACGCTCAGCAAACTGGTTCAGCTCGGTGTCAATCTGTGGGATCTGGAGCAGAGGCCTAATGTGGGCTCCATGCTGGTTCGGCTCGACTTCCAGGCAGACGTTGCACCCAGACTGCTCTTCCTCAGAGATCTGGGAGTTGAGGAGTCCGCGTTGGGTCGACTGCTCACCAAGAACCCCTTCATCCTTGCGGAAAGCCTGGACAACCTTCAGGCCAGGCCTGATGCGGGACGACACCATCGATGAGGGCAGTGATGTGAAAGAGGCTGTTCGTCGTCTTCCAGAGCCACTTTACAATGAGAGGGTTTTCCGCCTCAAGAGAGCCATGGATCTTTCCATGAAGCACCAGATCCTTCCCAAAGACCAGTGGACGAAATTTGAGCAGGATGTGAAGTACCTGGAGCCGTACCTGCAGGAGGTGATCCGTGAAAGGAAAGAGAAAGAGGAGTGGGATAAGAAATAGGAAGAGCGTGATGACGATGATCAAGCTCTTCTTTGCTGCGATGTCTGGTATTCttgtatttaaaagaaaatgtattatgtGATGAGTCCTTATTAAAATTTCCTTTCTGACAAAA
>TCONS_00029606
CCGGACAAGACGTCACGTATCCCACAACCCTGTGCGTTTCTCTCAGAGAACAAAAATGGCGGCGAGGGCACCAGTTGCTGCATCCGGCAGGTTCGTGGATGTCTTCAGGAAATGGTACTACAATGCGTGCGGGTTCAACAAACTGGGCCTGATGCGGGACGACACCATCGATGAGGGCAGTGATGTGAAAGAGGCTGTTCGTCGTCTTCCAGAGCCACTTTACAATGAGAGGGTTTTCCGCCTCAAGAGAGCCATGGATCTTTCCATGAAGCACCAGATCCTTCCCAAAGACCAGTGGACGAAATTTGAGCAGGATGTGAAGTACCTGGAGCCGTACCTGCAGGAGGTGATCCGTGAAAGGAAAGAGAAAGAGGAGTGGGATAAGAAATAGGAAGAGCGTGATGACGATGATCAAGCTCTTCTTTGCTGCGATGTCTGGTATTCttgtatttaaaagaaaatgtattatgtGATGAGTCCTTATTAAAATTTCCTTTCTGA
>TCONS_00029607
GCCTACCACCGAGGAGGTGCAAGACTGAAAACAACACGTGAACTCGCTGCTGCGGTTTACAGGTTTATCCCCTGCTAGCAAGAACAGGAAACTTCCCATCATGCATGTTTGTCAGCGGTGTGTGAGTGTTTTGCTGTGGAGGCCTTTATCTGCAGCTCTCCAGCAGTCGACACGCTCACTGCatcaacacacacaacacaacatacTGCAGCAGAGCACAACACACACATCCATCTACAGCAGACCAGGAGGACTTCGATACttcacacaccaacacacagCTTCTCCAGATGTCCATAACACTGATCCCCAACAGAACAAGCCTGGAAAACATGTTGTGCCGCTAGAAAATTCTGCCATGCATCAAACAAGTCAAGTTTATCTTTCAGGTCTGGATGCAGTTGCACGTCCTTCTCCACTTCAGGAAATCAGTGATGAAGAAGCAGTTCAGATCCAAGTGCCTTCAGTTCTTCCTGCAGACTCTTTCACACTCAGACCGTATGTGGAGAAATCAGAAACGCTCAGCAAACTGGTTCAGCTCGGTGTCAATCTGTGGGATCTGGAGCAGAGGCCTAATGTGGGCTCCATGCTGGTTCGGCTCGACTTCCAGGCAGACGTTGCACCCAGACTGCTCTTCCTCAGAGATCTGGGAGTTGAGGAGTCCGCGTTGGGTCGACTGCTCACCAAGAACCCCTTCATCCTTGCGGAAAGCCTGGACAACCTTCAGGCCAGGGTGTCCTATTTGAAATCAAAGAAGTTCAGTGCGCAGTCTGTGGCGGCGATGGTGACTAAAGCTCCATACCTGCTGAACTTCAGCGTTGAGAGGCTCGACAACCGACTGGGCTTTTTTCAGCAGCAGCTGGGACTCAGTGCTGAGAAGACCCGTAATCTTGTGACTCGTCTACCGAAACTATTGTGTGGCAGTTTGGAGCCAGTAAAGGAGAATCTGAAGGTCTGTGAACTGGAGTTTGGATTCCGTGGGAATGAAATCCAGCACATCGTCAGCACAGTTCCCAAAGTACTATTGGCTAATAAAAGAAAACTCACGCAGATCTTTGACTTTGTTCACAACACCATGAATATTCCACACTCGCTTATCGCAAAGTTCCCTCAGgTGCTTAATGCCAAATTCCTCCGCATCCGAGAGCGCCACTTGTTTCTGGAGTATTTAGGCCGTGCTCAGTACCAGCCAGATCAACCCAACTACATCTCCTTGAGTCGTTTGGTGTTCCTGCCTGATGATGTTTTCTGCTCAGAAGTTGCATTAGCCACTCTTGAAGACTTTGAAAGATTTCAGAAAACATTGTAGCTGTAATttcatgaatattattattttgcaaataaaCCAGTGTTTCGGTATGA
>TCONS_00029608
AGCAGTTCAGATCCAAGTGCCTTCAGTTCTTCCTGCAGACTCTTTCACACTCAGACCGTATGTGGAGAAATCAGAAACGCTCAGCAAACTGGTTCAGCTCGGTGTCAATCTGTGGGATCTGGAGCAGAGGCCTAATGTGGGCTCCATGCTGGTTCGGCTCGACTTCCAGGCAGACGTTGCACCCAGACTGCTCTTCCTCAGAGATCTGGGAGTTGAGGAGTCCGCGTTGGGTCGACTGCTCACCAAGAACCCCTTCATCCTTGCGGAAAGCCTGGACAACCTTCAGGCCAGGGTGTCCTATTTGAAATCAAAGAAGTTCAGTGCGCAGTCTGTGGCGGCGATGGTGACTAAAGCTCCATACCTGCTGAACTTCAGCGTTGAGAGGCTCGACAACCGACTGGGCTTTTTTCAGCAGCAGCTGGGACTCAGTGCTGAGAAGGATAGGATAAGATAgaaggatttttttttgcttctgaaAAATATTACGGATAAGTTtattaACCCGTAATCTTGTGACTCGTCTACCGAAACTATTGTGTGGCAGTTTGGAGCCAGTAAAGGAGAATCTGAAGGTCTGTGAACTGGAGTTTGGATTCCGTGGGAATGAAATCCAGCACATCGTCAGCACAGTTCCCAAAGTACTATTGGCTAATAAAAGAAAACTCACGCAGATCTTTGACT
>TCONS_00029609
GCTCATATATTTGTCTTTCAAAATTCTGGGATTGTTTATtctttaaatGAAACTTCCCATCATGCATGTTTGTCAGCGGTGTGTGAGTGTTTTGCTGTGGAGGCCTTTATCTGCAGCTCTCCAGCAGTCGACACGCTCACTGCatcaacacacacaacacaacatacTGCAGCAGAGCACAACACACACATCCATCTACAGCAG

Function

symbol description
uqcrb Acts upstream of or within angiogenesis. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex III. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in inherited metabolic disorder and mitochondrial complex III deficiency nuclear type 3. Orthologous to human UQCRB (ubiquinol-cytochrome c reductase binding protein).

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0001525 angiogenesis biological_process
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005750 mitochondrial respiratory chain complex III cellular_component
GO:0016020 membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040718-359 Predicted to enable double-stranded DNA binding activity. Predicted to be involved in mitochondrial ribosome assembly. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in mitochondrion. Orthologous to human MTERF3 (mitochondrial transcription termination factor 3).
ZDB-GENE-050522-542 Acts upstream of or within angiogenesis. Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex III. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in inherited metabolic disorder and mitochondrial complex III deficiency nuclear type 3. Orthologous to human UQCRB (ubiquinol-cytochrome c reductase binding protein).

Ensembl:

ensembl_id ENSDARG00000003207 ENSDARG00000011146 ENSDARG00000096277

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029603 False 538 mRNA 0.47 5 44049501 44054994
TCONS_00029604 False 499 mRNA 0.44 4 44049645 44054930
TCONS_00029605 False 668 processed_transcript 0.49 4 44049647 44062549
TCONS_00029606 False 501 mRNA 0.48 4 44049652 44055008
TCONS_00029607 False 1362 mRNA 0.48 8 44058557 44065581
TCONS_00029608 False 681 nonsense_mediated_decay 0.49 6 44058992 44062532
TCONS_00029609 True 204 mRNA 0.44 2 44063614 44064842

Neighbor

gene id symbol gene type direction distance location
XLOC_015031 NA coding downstream 148449 43897940 ~ 43901052 (-)
XLOC_015030 klhl43 coding downstream 229891 43790932 ~ 43819610 (-)
XLOC_015029 ppt1 coding downstream 291933 43736269 ~ 43757568 (-)
XLOC_015028 NA coding downstream 338208 43704915 ~ 43711293 (-)
XLOC_015027 si:ch211-193k19.2 coding downstream 389722 43654238 ~ 43659779 (-)
XLOC_015033 rad21b coding upstream 2669 44068250 ~ 44091405 (-)
XLOC_015034 csmd3a coding upstream 58037 44123618 ~ 44955710 (-)
XLOC_015035 NA coding upstream 938220 45003801 ~ 45007057 (-)
XLOC_015036 FP340497.1 coding upstream 1091921 45157502 ~ 45244708 (-)
XLOC_015037 trps1 coding upstream 1310088 45375669 ~ 45650994 (-)
XLOC_014711 CR382300.3 misc downstream 24320746 19728690 ~ 19728755 (-)
XLOC_015024 NA non-coding downstream 506933 43429805 ~ 43542568 (-)
XLOC_015023 NA non-coding downstream 766703 43272241 ~ 43282798 (-)
XLOC_015022 NA non-coding downstream 797751 43250524 ~ 43251750 (-)
XLOC_015038 NA non-coding upstream 1623656 45689237 ~ 45690415 (-)
XLOC_015045 NA non-coding upstream 2347032 46412613 ~ 46420558 (-)
XLOC_015047 NA non-coding upstream 2426002 46491583 ~ 46492033 (-)

Expression


Co-expression Network