XLOC_015066


Basic Information

Item Value
gene id XLOC_015066
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47931898 ~ 47932934 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030353
ATTTGATTTACTGAagagctgcttctcactcagggctgctgtttatgctaatgagggagagatggacactagtgggcggggctttccctctctgatgacatcagacaaagggagaatgtcaatcaaagtgtttctgcatgtgtttttatcaAGTTTGATTAGAACAAATACAATGAATTCATGTTTACtgttagaggctggagatattcacacactgctgacacacggctgggtttaaacctcttataaaagttaTTTCTGCATAATAGATCCTCTCTAAAATCTGTCACCTCCTTAAAGTTTCTGTAGTatatacagtaagttactgtaaactgACATTGTGGACATTTTCTGCATGCCGCTTAACTtcttatgttttatttacattactcTAAATGAAAACTTTGGATTGTTTAAATCtaaagttgggtcaaatatgcacAAGCCAAACActggtaattttttttaagtaaaatttttTGCCCCAACAGttgtgtttgtctatatttgacccagcattgagttgcaacattttttagagtgcaCGTTTCTGTTCATGCATGCACATGAGAGTTTTACTCTTCA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0021510 spinal cord development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030353 True 585 lncRNA 0.36 2 47931898 47932934

Neighbor

gene id symbol gene type direction distance location
XLOC_015065 ago4 coding downstream 99045 47800550 ~ 47832853 (-)
XLOC_015064 cdca8 coding downstream 148982 47771659 ~ 47782916 (-)
XLOC_015063 NA coding downstream 170407 47760897 ~ 47761491 (-)
XLOC_015062 CABZ01071972.1 coding downstream 344179 47578811 ~ 47587719 (-)
XLOC_015060 rrm2 coding downstream 360090 47564890 ~ 47571808 (-)
XLOC_015067 ctnnb2 coding upstream 42982 47975916 ~ 47997424 (-)
XLOC_015068 zgc:158376 coding upstream 70757 48003691 ~ 48015928 (-)
XLOC_015069 NA coding upstream 84772 48017706 ~ 48024071 (-)
XLOC_015070 csf3b coding upstream 104864 48037798 ~ 48039506 (-)
XLOC_015071 NA coding upstream 252364 48185298 ~ 48186157 (-)
XLOC_014711 CR382300.3 misc downstream 28203143 19728690 ~ 19728755 (-)
XLOC_015061 CU695215.1 non-coding downstream 364050 47567713 ~ 47567848 (-)
XLOC_015055 CU929178.1 non-coding downstream 515493 47415590 ~ 47416405 (-)
XLOC_015054 CU929178.2 non-coding downstream 531591 47400189 ~ 47400307 (-)
XLOC_015051 NA non-coding downstream 758490 46999261 ~ 47173408 (-)
XLOC_015072 NA non-coding upstream 304716 48237650 ~ 48241837 (-)
XLOC_015075 NA non-coding upstream 395614 48328548 ~ 48330301 (-)
XLOC_015076 NA non-coding upstream 401154 48334088 ~ 48336535 (-)

Expression


Co-expression Network