Fish Transcriptome and Expression Database

XLOC_015076

Basic Information

Item	Value
gene id	XLOC_015076
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	48334088 ~ 48336535 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030365
tctcagatcagcacAAACAGCagctcatcctcatcatcatcaccatcatcacatCATGATGAAGATTCTGGCTCTCGCTCTGCTGGTGGCGGCTCTTCAGACTCTAGCGGTTGATCCGGTAATTCACTAATATTGATTTGAATAATACATTTCTTTaactataatttaaatatataaactgcaTGATCAAAGTGCTGAAAATAAAGAGTAAATgtgtttgaaatatatatttattatttatttaaatatttgctgTGTTCTATGATCTAAAACATTATTATGGCTGTTTATTATCTTTTCTTTGTCTGTGTTAATCTGCTTTTCACAATCTACATAATAAACGCTACATAGACATGAAGATGACTTGAACTGTTGATCTGATAAAGTCTGAAGAATTGGAGAATTTGGTTTTCACATATTTGTAACAGTCAGATATGGCCAATATTTATATGAAATGTGAATGACACAACTCAACAGCTGGATTTGTCCACATTTGATGAATGATAACAGTCCAGCACTTTCACTGAGACGAACATCTGTTCATGAGCAGTTTCTGTATTTACTGTGTTTTGGGTTTATGTGCggtggtgaactgcattatgggatgttgatctctgctctacttctgatgttgaaaattcaactccacAGTTTAACACGGTTACTTTTAGTAAGAGTGTAAGGATTTCATGCATAGATGCGAAACTAAAAACTGTGTTAATGCAGAACCTGATTTGATATTCAAATGATGATTTGAATATTCGTCAGATCAGAAGAACAGGAAGTAGAAACGCTGTCACTAGTGGTTTTGTCTAACACACTGTCCTTACTTACTTCTTGttgcataaataaagcaaaccCCAGCACCTACAGGTACTAGAGTCACAACAGTTCCTACATCTACTACAGCTGCTATATTGACCAGCAAATCCACACACAGCTCCAGCATTGGACTGTCAGTCCTGATGGCTCCGTTCCTGCTTTCGGTCTCCATGTTTCCGTGGTGGCCCTGTATATAATGTAAGGTTAACCGCTGGAATTATTATTAAGACATTAATGCTGTAAATTATAAGAAATAAAAGATATTTTCATACAAATCTGCACAGTGACTGACATCTATCctcaaatgctttttttataattattttttcagggttttcatcTTTATTGGATAGCACAGAGAGTATTCACaggagagcagagagaggggaaggatcggcatagggcAATGCGGTGGAATTGAACTCGAGTTGCCgtgagcaccagagtgcatgtgtcgacgcacttaccactacaccactggcactGACTGATTCTGAAATGTTAATCTGAAAACATTGATTATTTACTCCCCTGTGCTTTACAATCTGATTCATATGTTATGTACTGTAACTACTGTATATGCATGAATATACAAGCACCATCATGATAGTTAATGATTAACTGCTGGAATTAATATTAGACATTACAGTtgttctcagtggctttggttcatttctcacaacactatttacacaacagttcatgcatttctccACACAGTTAGTCATCTGTGCACATCACagcagcagtttctcattccttccaacacattgcGAATGCTTTTGTAAATGCATCATCTGATTTCagacaactctctgctgtttatcaCATCATCATCTGctcatgtcatgtcagtcaaaattaattaagctttaaatgctgaatagtcactccGTCAGTGTGTTGTACTCAGACACCTCTCTAAATGctgtgatgtctaactttactgtagtctTCAGATGGCTGTGctaatagtatacagtgctgtcttgatcATTTTCAGGACCAAAATATGACTTTATTTGCATTGGAAAAATGAACACAGTAaagtgtcataatgaaaacaggaCGAAGCCATCTGATTATCTCGTTCATAAGTACTGGTGTCAGGACTCTTCATCTTGAtcacactgacactttcattgacatcaatacttgctcttgaggaatgagctctccatgTTGAGCAAGAGACACGCTTCTGCAGGTTATCAGctgggttttgcagtttgtactaatagTTTAGAGAAATGCATGAATGTAAATAGTgatgtgagaaatgcaccaaagccactgagaacaACTGTAAAACTACtgttaatgataaaaataaaaggcattttCATACAAATCTGGACTTGATGCGGATTCTCAAATAATAATCTGAAAATCTGAATTATTTACTTCTGTGTGTTCACAAGCTGATCATAGAGGATTCACACATTATGTACTGTTTCTATAAGATTGAATAAACTAGCATGAGGAGGATTTATGAAGAAACTCTACTGGTGTTAGAGTAAATGAGCTTTGCTTAGTGACTGATACAGCTGAGAATATATCAGTTCCCCATTAAAGATGGATTGAAATCTGTTAATGTTTCAATAAAGCACAATATTTCTCTGTT
>TCONS_00029675
gatctcagatcagcacAAACAGCagctcatcctcatcatcatcaccatcatcacatCATGATGAAGATTCTGGCTCTCGCTCTGCTGGTGGCGGCTCTTCAGACTCTAGCGGTTGATCCGcaaaccCCAGCACCTACAGGTACTAGAGTCACAACAGTTCCTACATCTACTACAGCTGCTATATTGACCAGCAAATCCACACACAGCTCCAGCATTGGACTGTCAGTCCTGATGGCTCCGTTCCTGCTTTCGGTCTCCATGTTTCCGTGGTGGCCCTGTATATAATggttttcatcTTTATTGGATAGCACAGAGAGTATTCACaggagagcagagagaggggaaggatcggcatagggcAATGCGGTGGAATTGAACTCGAGTTGCCgtgagcaccagagtgcatgtgtcgacgcacttaccactacaccactggcactGACTGATTCTGAAATGTTAATCTGAAAACATTGATTATTTACTCCCCTGTGCTTTACAATCTGATTCATATGTTATGTACTGTAACTACTGTATATGCATGAATATACAAGCACCATCATGATAGTTAATGATTAACTGCTGGAATTAATATTAGACATTACAGTtgttctcagtggctttggttcatttctcacaacactatttacacaacagttcatgcatttctccACACAGTTAGTCATCTGTGCACATCACagcagcagtttctcattccttccaacacattgcGAATGCTTTTGTAAATGCATCATCTGATTTCagacaactctctgctgtttatcaCATCATCATCTGctcatgtcatgtcagtcaaaattaattaagctttaaatgctgaatagtcactccGTCAGTGTGTTGTACTCAGACACCTCTCTAAATGctgtgatgtctaactttactgtagtctTCAGATGGCTGTGctaatagtatacagtgctgtcttgatcATTTTCAGGACCAAAATATGACTTTATTTGCATTGGAAAAATGAACACAGTAaagtgtcataatgaaaacaggaCGAAGCCATCTGATTATCTCGTTCATAAGTACTGGTGTCAGGACTCTTCATCTTGAtcacactgacactt

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

ZFIN:

id	description
ZDB-GENE-141212-358	No description available

Ensembl:

ensembl_id

ENSDARG00000099282

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00030365	False	2446	lncRNA	0.37	1	48334088	48336533
TCONS_00029675	True	1094	mRNA	0.42	3	48334573	48336535

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015075	NA	coding	downstream	3787	48328548 ~ 48330301 (-)
XLOC_015074	si:ch73-359m17.9	coding	downstream	21979	48308750 ~ 48312109 (-)
XLOC_015073	si:ch73-359m17.11	coding	downstream	27323	48300293 ~ 48306765 (-)
XLOC_015072	NA	coding	downstream	92251	48237650 ~ 48241837 (-)
XLOC_015071	NA	coding	downstream	147931	48185298 ~ 48186157 (-)
XLOC_015077	NA	coding	upstream	2811	48339346 ~ 48349001 (-)
XLOC_015078	rpl14	coding	upstream	27777	48364312 ~ 48371092 (-)
XLOC_015079	si:ch73-359m17.2	coding	upstream	46428	48382963 ~ 48391434 (-)
XLOC_014711	CR382300.3	misc	downstream	28605333	19728690 ~ 19728755 (-)
XLOC_015069	NA	non-coding	downstream	310017	48017706 ~ 48024071 (-)
XLOC_015066	NA	non-coding	downstream	401154	47931898 ~ 47932934 (-)

gene	XLOC_000007 f7
RNA	TCONS_00000019
bioproject	PRJEB12982

model fish

Basic

Function

RNA

Neighbor

Expression

WGCNA

XLOC_015076

Basic Information

Chromosome Information

Sequence

Function

GO: NA

KEGG:

ZFIN:

Ensembl:

RNA

Neighbor

Expression

Co-expression Network

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