XLOC_015225


Basic Information

Item Value
gene id XLOC_015225
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8484394 ~ 8488138 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033476
attctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcatgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcttagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacgtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033238
aaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033239
cggttttccacaaggtaagtaaaaaatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033477
TACTTTACAACTGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaagggtaatgtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtggtaagtcatagttttattaatttttttattttattgcaacactaagtagtccattctgtggccaatatgatataaagggcctaaaatgggactgatgtgatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttagcttcattgagtaggacatttctttcagtatactcttaaagagattcacccaaaaatgaagattctgtcattattgactcatccttcacttgttccaaatatgtCTGACTTGCttacttcagttaaacacaaaaaaattatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcctactatgtatgtcaatgttttcagctttccagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagtgaactattcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtggcttaaaccccttacattttatacaaggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttctaggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggatttaaggcaacatgtttcgatgcagttttctaataaagtcaactagtttgggttaagagtgtaatgggttacagtaatagcagtgaatcatgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatatttttagggTGGAGCACAGTATGCTGTTGTAGTTTTCATATAATTGATGAGTCAAACATGagatgtgttttaaattgcaagacgtgaattaacaatatgttcatcaagattcaaatcttgcatcttatattttttaaggttgtggcccaataatacccatattctgctatttaaaaaatcatgctggaatttgtgtcagcattcccttcaatgaaaactacaacagtggacatcagtggtgataaaaatgtatgagaaggataagggtgttcataatgagaagtgcagtcactatcctgatctctgagtttgtagaactgacagatctgcttggaataaatggaaacatgctggaaatgtttaacctattatacagttaattcaagagtgccaggtttaatgacactttacatatataaataaatatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatgttgtgcacttctaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaacttataaaatatatatttttggttaaaatatatatttttgcatttttgtgtgatttttattatttatttttatttgtggcattataaataaattataaatgtttcattaaaaa
>TCONS_00033240
TGCTTAATGCAGTACTGATGTATCTAGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaaggaactcttcacagcactgcagctaaacagtcacaacctcacagagctgcacaactgccccactcagatcagtgttgaagctggaacctcatcttgtgtacagcaaaggcagagctgaaaattcactgtttgtcttgtattgtgtgtggcaaaacctggaataacacatgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtaaaaatagtttttgctattcttcagtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcatttgtcatgaacttgacttcttgttgttgtgaaagctgtttattatgatggcatttccaaaggcatcatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataataataataatacaaaatatacatttcc

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0045110 intermediate filament bundle assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048340 paraxial mesoderm morphogenesis biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033476 False 1191 lncRNA 0.35 5 8484394 8488138
TCONS_00033238 False 841 lncRNA 0.32 4 8485011 8488138
TCONS_00033239 False 823 lncRNA 0.31 4 8485040 8488138
TCONS_00033477 False 2319 lncRNA 0.31 1 8485820 8488138
TCONS_00033240 True 699 lncRNA 0.36 3 8485831 8487964

Neighbor

gene id symbol gene type direction distance location
XLOC_015224 dipk2aa coding upstream 172195 8261109 ~ 8312199 (+)
XLOC_015223 BX248229.1 coding upstream 294994 8189285 ~ 8189400 (+)
XLOC_015222 chst2a coding upstream 369786 8112449 ~ 8114608 (+)
XLOC_015221 pcolce2a coding upstream 433896 8031234 ~ 8050498 (+)
XLOC_015220 si:ch211-38m6.6 coding upstream 610010 7847480 ~ 7874384 (+)
XLOC_015226 fubp1 coding downstream 161155 8649293 ~ 8663104 (+)
XLOC_015227 NA coding downstream 202520 8690658 ~ 8691029 (+)
XLOC_015228 usp33 coding downstream 229017 8717155 ~ 8777496 (+)
XLOC_015229 zzz3 coding downstream 290352 8778490 ~ 8842472 (+)
XLOC_015230 pigk coding downstream 573747 9061885 ~ 9138497 (+)
XLOC_015218 NA non-coding upstream 716121 7763907 ~ 7768273 (+)
XLOC_015217 CT027646.1 non-coding upstream 760453 7723870 ~ 7723941 (+)
XLOC_015216 CT027646.4 non-coding upstream 760811 7723394 ~ 7723583 (+)
XLOC_015215 SNORA81 non-coding upstream 763004 7721212 ~ 7721390 (+)
XLOC_015231 NA non-coding downstream 644447 9132585 ~ 9330209 (+)
XLOC_015232 NA non-coding downstream 828181 9316319 ~ 9318279 (+)
XLOC_015236 NA non-coding downstream 1163578 9651716 ~ 9657047 (+)
XLOC_015239 BX470264.2 non-coding downstream 1387391 9875529 ~ 9875645 (+)

Expression


Co-expression Network