XLOC_015528


Basic Information

Item Value
gene id XLOC_015528
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30365801 ~ 31460329 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033269
actgtaaaatatataaataaattaacagttttctgtattttgtgattcacatttatgtattttttattactaatgcTTTTGAATCACATTATGAAACTTTGATCtttcttctgacaacttttaaccttaacaagttggaaaaagtgacttatatgcacatttttaatagtttaaagtgatatattctcTGGGTTgCGAACTAATTACTACTTGGCCACAGTAAACATCTCCTTTCTGGACTGAAGAATGCATAAGCAGTAAGAGTCAGTTCCAAGAAAACCTGCAAATTCACAGTTCAGCGGAAGAGGGGAGGAGAGCTGAAGGGGAGTGGGGTCGTATGTGCGTCACGTTGCTCTTACTCAGCTTCCACCTGCCAAAGAAAACGATATGCCTCTGAAGGGGCTTCTTAACTTGGCTCCACACACACGCTGGCAAAATGGGCTCTTTGGACTCACATTGAACAAGTGTATCTGTGTAGAAAATAAGACAAGAAAAAACACATATAATACAAAAATCAAAGCTCACTGACTTTATGTGGCTAAAGATGTATCATATTTTGCTGTGTTTAGTGAACTGTAGCCCATGAGTTGgggttccaatgggtcttctgcagtatttgtgatgattgggatgcagttcaacagattattcatcagaaaatccttctgccacttttccaaataatcaacttgaattcaagttattatttgttgctcttacaactggaatcaacgacaagacttttgtcaggtagtgtacactgaTGTATGAATTTATTATGTTCTGTTAATATTTATTGAACAATATGGTAACACTAAATGATGCATTATAAAGGTATTATTGTTATGTTGTATGCATACATAATTCTTTATAAACAACCTTGTAATATGTTGTATCATGTAATAAATAATCATGAAAATGGTTAAACAATTATTGTAATGCATTATAATGCACAcgtaatgcattaatgcatgcaTAAATGGTTGCATGATGCATAGCTTTCTAATAGATTACTGTTTTATTGTTGTCAGACGCCATGTGATGCATTTGCCACCTTGAAAGCAGCGTGACAGAATGAGGTGTAACTGAGCTCTTACCAGAAGCATTGTCTGATAGGTCAGtacattttttactatttctcttgcgtttttaatatactgtatgtttatgtcactatgtt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033269 True 1180 lncRNA 0.34 4 30365801 31460329

Neighbor

gene id symbol gene type direction distance location
XLOC_015527 NA coding upstream 31288 30329405 ~ 30334513 (+)
XLOC_015526 si:dkey-82k12.13 coding upstream 79552 30281444 ~ 30286249 (+)
XLOC_015525 CR788254.3 coding upstream 85297 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 coding upstream 88739 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 coding upstream 95638 30269306 ~ 30270163 (+)
XLOC_015553 cacnb2b coding downstream 15443 31475772 ~ 31519662 (+)
XLOC_015554 NA coding downstream 77009 31537338 ~ 31540590 (+)
XLOC_015555 si:ch211-106h4.4 coding downstream 137512 31597841 ~ 31607080 (+)
XLOC_015556 si:ch211-106h4.6 coding downstream 154204 31614533 ~ 31626209 (+)
XLOC_015557 si:ch211-106h4.12 coding downstream 205507 31665836 ~ 31669111 (+)
XLOC_015521 NA non-coding upstream 168060 30197370 ~ 30197741 (+)
XLOC_015559 NA non-coding downstream 323683 31784012 ~ 31786282 (+)
XLOC_015564 NA non-coding downstream 406170 31866499 ~ 31868755 (+)
XLOC_015567 NA non-coding downstream 559313 32019642 ~ 32127930 (+)
XLOC_015568 NA non-coding downstream 688792 32149121 ~ 32188991 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G30894 NA non-coding CI01000004 null 10822151 ~ 10822374 (+)
striped catfish (Pangasianodon hypophthalmus) G29612 NA non-coding NC_047596.1 CM018542.1 18883984 ~ 18887011 (-)
mexican tetra (Astyanax mexicanus) G26009 NA non-coding NC_035899.1 CM008302.1 43921876 ~ 43924352 (-)