XLOC_015556 (si:ch211-106h4.6)


Basic Information

Item Value
gene id XLOC_015556
gene name si:ch211-106h4.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31614533 ~ 31626209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031096
CTCAAACGTGCGTCACTGACTGTCGTGGGTGTGTTTGGAGCTGAACGTCCCGCGCGTTGTTCTACATGTCGGTCGCGTGCACTTTTCTGCCTTCTCCCTCCGTTTAAACGAACAAGTATTCGTTAAATATAGTTGGTTATGGCACTGCCAGCAAGACCACATGTTTTCTTGGGTATTTTTGCTGTTATTCAGATTAAATTTACCTTTCAGGATTTGTCATCCAGTGGAGTCTCCTGTTTTACCTTTGAGAGACCCTCCAAGCAAGAGGACGCAGGCGTAAACCTCACGTTTGACAGTAAGAGACAGAGGAGATGGATGTTCACATCCAAGCCAGAGGTGGAAATCAGTCAGAACCAGGAGCTGAAGCGATATGTAGAGCACGGCAGGTTGGATTCAGAGCGCTTTCCAGAAGTTGTGACGAATGAGAGCCATGACAACTTATCCATTAAGAGAGATATGGATCATATCTACTACACATCCAAATTCTATAAGCTTACAGACAGTTCACACAAGGATTTGTGggtaaatattgagaaaatggACACTGGAAAAGTTCATGAAATCCTCTCCAACACACATCGACAAACTTTGAGAGTCAATATGTCTTTTGATTTTCCTTTCTATGGACATTCATTAAGAAAAATCTATGTAGCAACAGGAGGTTTTATCTACACTGGAGATGTTGTCCACAAAATGCTGACGGCTACTCAATACATCGCTCCCCTAATGGCCAACTTTGACCTCAGCATCTCACAAAACTCAACAGTCATTTACTGTGATAATGGCACAGCTCTTGTTGTTCAGTGGGAGCGAGTGCATCTCCAGGACGAGGCTCTTCTAGGCAGTTTTACCTTCCAGGCAGCCTTATACGCTGATGGCAGAATCACCTTTGCATATAAAGAGATTCCAGTTGACATTAGTAAGATCAGCTCAGTGGATCATCCTGTGAAAGTGGGGCTTTCTGATGCATTTGTGGTTCTTCATAATATTGAACAGCTTCCCaATGTTTGGAGGAGAACTATATATGAGTATCATCGTGTAGAGCTCTTAAAATCTAAGATCACGAATGCGACTGCTGTTGAGATGCTTCCGCTGCCGACCTGCCTTCAGTTCTCAAGCTGTGAGACGTGTGTTACGGCTCAGATTGGCTTCAACTGTAGCTGGTGCAGTCGCTTGCAGAGGTGTTCCAGTGGATTTGACCAGTATCGTCAGGACTGGGTTGACAATGGTTGCTTAAGTGAGATAAAGACCCAGAGCTGTGACAGAAAACAGTCCCTCGTTAGCAGTACTCCACCAGGGAAGACAGGACTCACAGCAGCTTCTCTAACTACAACAACATCGACCACATCAGCCTCCTCACTCACCGGCAACGTCACCGGCACAGACTTATTCATGACAAACCTGTCTACCAGCCTCTTTACTGATGatggagagatgggcatcTTAGAGAAGCAATCAGAGGAGCAAATGCAGACTGGTTTACTCATTGGCATTCTtttaacaatggtcctaatggtACTCGCTGTGTTAGCCACCATATACATGTACAACCATCCCACATCCAGCGCCAGTCTCTTCTTCATAGAGAGACGACCGACACACTGGCCTGCCATGAAGTTTCGCCGAGGTTCAGGACACCCCTCATATGCAGAGGTGGAAGCCACGGGACAGGATAAAGAGGGCTTCATCATGATGGACTCTAGAGACAGTTTTCTGCTTGCAGACAGGAGAGAGAGCCTGTTTCTGACAGAGCCAAAGGAAGGATTCATCGTCTCTGACCAGAGAGAATGTTTCGTCATCATGGAGCACCGCTAAAGGTCAATCCAGTGCTTTTTATGAATTAGTTCCTCTGTTTTTGAGAGTAAGTTGCACTGGCTGCTGGGATGAATGAATGTGGTATTTGTTAGAGTGCTACAAATGCGAGAGATCTATTGCTCCATCATCACACCGAAGTGCTGTGTAAACAATGTGGATGCATTAGTGCTGTTTTCTGACCTGATGACGCCAGTGGAATTGAAGTGCTTAGGAAAAACCTTCTCAATTCAGCTTCTGTTTACTTTGCTTCTAAATGGAACCTTCTGGAGATGCAACGATGATGAATCAAGTTAGTGAAAAACCTCAAAAAACATTCAGTGTAAATCAGGGAAGGCTAAAGGTTGAACTGTATTTCTGCAAGTCTTACGTAATGGACCAAAATAAATCCGAATTCTTGTGGATTACGCTGTATGACCTTGGTATCGTAAATGAGATCCACAGTTATGAAGAACAATCTGAACTTTCAAAGTTCTTTGACATTTTCAGAATGTTTGCATATCAGAGAAAAACTGAGATACTATAAGGCgatcaaacacaaaaaaacagaaaatccTCCTTATTTTTAGGTGTAATCATTTACAAACAAgtcactgtaattaaattactgtcTGCTGAAAATGTAAAGTAAGGAGTTACTTTAATTTTTTAGGTCATTTATTTAGAGATATATTAGCTAGAAGtaatatacagtagaagtcagaattattagcccccctttgaatttttttttcttttttaaatatttcccgaaagatgtttaacagagcaaggaaatttccacagtatgtctgataatatttattcttcaagagaaagtcttaatttgtttcattttggctagaataaaaacagtttttaatttttttaaaaatcattttgaggtcaatattattagcctctttaagctatatatttttggatattctacagaactaaccatcgttatacaatatcaATCGTtatacaacttgcctaattaccctatcctgcctagttaacctaattaacctacagtagttatgcctttaaatgtcattataagctgtgtagaagtgtcttgaaaaatatctagtcaaatatgatttactgtcatcttggcagattaaataaatcagtaattataaatgagttattgaaactattatgtttagaaatgtgttgaaaaaaaaatctgctcttcgttaaagAGAAATcggtggaaaaaaaataaacaagggggctaataattctgacttcaactgtactcgccttaaatactgtacataacaTTTCTGTATAAATCAAGTCAAAGAAGCagaataatatgtatatatttgttattcagatttattttatttgtctgacAATGGCACATGCTTAAGAAACAATGACATGTTTTAGAAATTTATGTCAATATAtggtatatattaaatatagtaatg
>TCONS_00031097
ATGGCACTGCCAGCAAGACCACATGTTTTCTTGGGTATTTTTGCTGTTATTCAGATTAAATTTACCTTTCAGGATTTGTCATCCAGTGGAGTCTCCTGTTTTACCTTTGAGAGACCCTCCAAGCAAGAGGACGCAGGCGTAAACCTCACGTTTGACAGTAAGAGACAGAGGAGATGGATGTTCACATCCAAGCCAGAGGTGGAAATCAGTCAGAACCAGGAGCTGAAGCGATATGTAGAGCACGGCAGGTTGGATTCAGAGCGCTTTCCAGAAGTTGTGACGAATGAGAGCCATGACAACTTATCCATTAAGAGAGATATGGATCATATCTACTACACATCCAAATTCTATAAGCTTACAGACAGTTCACACAAGGATTTGTGggtaaatattgagaaaatggACACTGGAAAAGTTCATGAAATCCTCTCCAACACACATCGACAAACTTTGAGAGTCAATATGTCTTTTGATTTTCCTTTCTATGGACATTCATTAAGAAAAATCTATGTAGCAACAGGAGGTTTTATCTACACTGGAGATGTTGTCCACAAAATGCTGACGGCTACTCAATACATCGCTCCCCTAATGGCCAACTTTGACCTCAGCATCTCACAAAACTCAACAGTCATTTACTGTGATAATGGCACAGCTCTTGTTGTTCAGTGGGAGCGAGTGCATCTCCAGGACGAGGCTCTTCTAGGCAGTTTTACCTTCCAGGCAGCCTTATACGCTGATGGCAGAATCACCTTTGCATATAAAGAGATTCCAGTTGACATTAGTAAGATCAGCTCAGTGGATCATCCTGTGAAAGTGGGGCTTTCTGATGCATTTGTGGTTCTTCATAATATTGAACAGCTTCCCaATGTTTGGAGGAGAACTATATATGAGTATCATCGTGTAGAGCTCTTAAAATCTAAGATCACGAATGCGACTGCTGTTGAGATGCTTCCGCTGCCGAGTAAGTCTGAACTgctcacacattcattcattcaattttttcggcttagcccctttattaaactagggtcaccacagcggaatgaactgccaacttatccagcatatattttatgcagcagatgcccttctagctgcaacccatcactgggaaacacccatacatactcatttacacacacacacacacatacactacggacatttttagcttacccaattcatctgtaccacatgtctttggactgtgggagaaagtGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-16 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLXDC2 (plexin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000077219

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031096 False 3236 mRNA 0.39 13 31614533 31626209
TCONS_00031097 True 1221 mRNA 0.43 8 31614671 31620038

Neighbor

gene id symbol gene type direction distance location
XLOC_015555 si:ch211-106h4.4 coding upstream 7453 31597841 ~ 31607080 (+)
XLOC_015554 NA coding upstream 73943 31537338 ~ 31540590 (+)
XLOC_015553 cacnb2b coding upstream 94871 31475772 ~ 31519662 (+)
XLOC_015552 si:dkey-32m20.1 coding upstream 156673 31454562 ~ 31457860 (+)
XLOC_015551 stam coding upstream 161927 31437547 ~ 31452606 (+)
XLOC_015557 si:ch211-106h4.12 coding downstream 39627 31665836 ~ 31669111 (+)
XLOC_015558 ackr4a coding downstream 45336 31671545 ~ 31674403 (+)
XLOC_015559 NA coding downstream 157803 31784012 ~ 31786282 (+)
XLOC_015560 rnf182 coding downstream 178373 31804582 ~ 31805604 (+)
XLOC_015561 ranbp9 coding downstream 180393 31806602 ~ 31827960 (+)
XLOC_015549 NA non-coding upstream 321930 31291646 ~ 31292603 (+)
XLOC_015545 CT955962.3 non-coding upstream 396755 31100444 ~ 31217778 (+)
XLOC_015564 NA non-coding downstream 240290 31866499 ~ 31868755 (+)
XLOC_015567 NA non-coding downstream 393433 32019642 ~ 32127930 (+)
XLOC_015568 NA non-coding downstream 522912 32149121 ~ 32188991 (+)
XLOC_015569 NA non-coding downstream 638146 32264355 ~ 32266672 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_11622516_11634475 NA coding CI01000004 null 11622516 ~ 11634925 (+)