XLOC_015544


Basic Information

Item Value
gene id XLOC_015544
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31075576 ~ 31084080 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033270
AAACCTAACTTTATGCAATGTAAATAGTTACTTACATGTGTTGCACGTTGTATAAAGACCTCAAAAACTCCACAGAACGCCGAAACTGGTCCGGTACAGGTATGAGCAACGATGTCGTTGCTCTGCATGCGTGCTGCGTCATGTGGGCGGGTCGTGAAGTTTTACTTTGGATAAAAACACTTAAATAGAGTTTTGTAGAAGCAATTTATTTTGAAGGtcagtaaaacacatttttttgatggGTAATAATAAGTTACAAAAACAATCGCAATTTTTACTTATGTAAAACTTGAATTAATTCAAAATGGAAAGGTAATCAATTTATTGGaagaaatatactttttaaaattaattcctATAGACAACACCCTTGaagaactttttacagtgtgctttatTAAAGTTCACTCTTCATCCGCGGAATAATAGTCCTCCTGACTGGATGAGCAGTGCAGGTGTGGCGGTAGCCCCTGCTCCTCCTCCAGATGCTCCAGCGCACGGATCTCCTCCAGTATGTCTGCCGGTAAGCTGATCTCCAGCGGCCGCTCCATCAGCAGCAGTTTCCGGCAGTAGTGTCTCTCGGTGCGGTCTACGGGCTTCGGAGGGAAAAGCTCGGTGCTCAGCAGGGCTTTGATCGGCCGGTCCCGGAGGTTTATCCGCAACACGCGGTGCGGTCTCCCGGGCACCCGCGGAGGCCGAAAGTCCCACCAGTTCTCCTCGGTTTCCTGCAGGAAGTGCTGCAGGTTCCGCAGCTTCAGCAGGCTCCGGGGCCCGCGGGTGGGGAAGCGCAGCTCGTGCTCGAGCTCGAAGTCTTCTATCCAGTCCCAGTGCTTGGGTCTGGTCCTCCGTTTGACTTGTCGGCGGAAAGCCTGCAGCTGCTGGTATTTGCTGTGGATGTAGGAGCAGCACTCGTTTATCTGGGCCGCGATGGACCTCGCAGTTCTCGCAATCGTCTTCGCCATCGCGCGCTGGGAAACAGTGTAATCAGCAGTAAAGTGGAATGGAGCTGCTGAGGTGAGCGAGGAGTGGGACTTCAGAGCACACCGTGAGATTTTATGGCTTCTCCGCTGAGGGATGCCTTAGTCGAGTTTCATCAGAAGCCCGCGCTGGCATCGTCTCTTTATCCTCCTCCTCTCTGCTTCTATGTGCACCAAAGGAAGCTCTCAGCATCTCAGTCTGCCACTAAACAGGTAGAGATCTCCCCGAGCAAGCTTCCCCAGAAATAGCTCCCGTATACAAGTCTTTTATAATCGCACAACTTTGAT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0060898 eye field cell fate commitment involved in camera-type eye formation biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033270 True 1265 lncRNA 0.50 2 31075576 31084080

Neighbor

gene id symbol gene type direction distance location
XLOC_015543 lpin2 coding upstream 91068 30960351 ~ 30984508 (+)
XLOC_015542 myom1a coding upstream 115663 30916188 ~ 30959913 (+)
XLOC_015541 bag1 coding upstream 167276 30904069 ~ 30908300 (+)
XLOC_015540 chmp5a coding upstream 174456 30894595 ~ 30901120 (+)
XLOC_015539 oprk1 coding upstream 189009 30878864 ~ 30886567 (+)
XLOC_015545 CT955962.3 coding downstream 16364 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 coding downstream 17008 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 coding downstream 23849 31107929 ~ 31108414 (+)
XLOC_015548 clul1 coding downstream 187002 31271082 ~ 31364659 (+)
XLOC_015549 NA coding downstream 207566 31291646 ~ 31292603 (+)
XLOC_015527 NA non-coding upstream 741063 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 795072 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 798514 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 805413 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 877835 30197370 ~ 30197741 (+)
XLOC_015554 NA non-coding downstream 453258 31537338 ~ 31540590 (+)

Expression


Co-expression Network