XLOC_015541 (bag1)


Basic Information

Item Value
gene id XLOC_015541
gene name bag1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30904069 ~ 30908300 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031069
CGGTTGCACATGTACACACTGCAAAGTTGTGAAGCGCTAGCTAACAGTGTGCCGATATGGCGGAGAATGCCTTGACAGTGACAGTTGCTTATGGCACAACCAAACACAGCATCACTTTAACAGGTCAAGATGGACATGAACCACTGTTGAAGGATTTGTGTGAGGCGCTGACAGAAGCCACCGGAGTACCAGCACCATCCCAGAAAATCATATTTAAAGGGAAGTCATTAAAGGAAATGGAAGAGCCGCTGTCTGGCTTTGGAATAAAGCAGGGTTGTAAAATGATGATGATTGGAAAAAGGAACAGCCCCGAGGAGGAAGTTGAACTAAAAAAACTTAAAGATATTGAAAAGTCAGTGGAACAAACCGCTAAGAAGCTTGAGAAGGTGGACGGTGAACTCACTGGACTGAAGAACGGTTTTCTTGCGAAGGAGTTGCAGGCTGAGGCGCTAAACAAACTGGACCAAAGAGTGAAAGTTGCTGCCGAACAGTTCATGAAGATCCTTGAGGAAATAGATGGAATGAGCTTGCCTGAGAGTTTTAGCGATTGCAGGATGAAGAAAAAAGGACTTGTAAAAACTGTTCAGggGTACTTAGCGCAGTGTGACAAAGTTGAAGCTGGAATATCAGATCACCTGGCCAAGATTCAGACTAAAAACTTAGCCTTAGCAGAGTGATGGTGAATAAAGACCGGAGGCATCAGCAGTAAATGTTGCTGCTCTGTGGGCGACTGAAAATCCTCACTGAGAGCTTTGGCACTGGAGGTGGTCCTGCAGTTCATCTAAACCCCATGACCCACACATGCACCTCTCATACAGAGAACAACGGCGGCATTTCAGACATTTTCTTATCAGTTTAGATTTTTCATGGTAAATGTTAGAAATACCCATGGCTTATGACAGGTTTAATGACGGAAAAGTTTCAAAAATCTGAAGCCTTTTAACTTTGTTACCTAGCCTAAGTTTGACAGATATTTGGATTCATAGTCGTATTACTTTggtcaaatggaaaaaaaaagattaataatggTGCTGGAAGAATGTCCTTTCATGTGATTTCATTAAATGATGTAATTCAATACATAACTCAACCTGGTGTGAAACTTTTAGATTAAAAAAGTTATTCTATTTATTGAAAGGGTGGAATTGTTCAAAGCAAAGGAGTGTAGCTTGATAgtccttgttttgttttatcattattaaatctCAGGGTGCTTCAAACCACTGGTGGTTTTCTCCATCGATTTATGTCTCCAATGTTGTTCTGAAGTTAATGAGAGAAATTAAACATTTGAAGAC

Function

symbol description
bag1 Predicted to enable adenyl-nucleotide exchange factor activity; chaperone binding activity; and heat shock protein binding activity. Predicted to be involved in protein stabilization. Predicted to be active in cytosol; membrane; and nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human BAG1 (BAG cochaperone 1).

GO:

id name namespace
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000774 adenyl-nucleotide exchange factor activity molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050309-89 Predicted to enable adenyl-nucleotide exchange factor activity; chaperone binding activity; and heat shock protein binding activity. Predicted to be involved in protein stabilization. Predicted to be active in cytosol; membrane; and nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human BAG1 (BAG cochaperone 1).

Ensembl:

ensembl_id ENSDARG00000020895

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031069 True 1298 mRNA 0.41 7 30904069 30908300

Neighbor

gene id symbol gene type direction distance location
XLOC_015540 chmp5a coding upstream 2949 30894595 ~ 30901120 (+)
XLOC_015539 oprk1 coding upstream 17502 30878864 ~ 30886567 (+)
XLOC_015538 atp6v1h coding upstream 57142 30786773 ~ 30846927 (+)
XLOC_015537 tcea1 coding upstream 155999 30739680 ~ 30748070 (+)
XLOC_015536 si:dkey-94e7.2 coding upstream 177649 30721070 ~ 30726420 (+)
XLOC_015542 myom1a coding downstream 7888 30916188 ~ 30959913 (+)
XLOC_015543 lpin2 coding downstream 52051 30960351 ~ 30984508 (+)
XLOC_015544 NA coding downstream 167276 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 coding downstream 192144 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 coding downstream 192788 31101088 ~ 31101573 (+)
XLOC_015527 NA non-coding upstream 569556 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 623565 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 627007 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 633906 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 706328 30197370 ~ 30197741 (+)
XLOC_015547 CT955962.1 non-coding downstream 199629 31107929 ~ 31108414 (+)
XLOC_015549 NA non-coding downstream 383346 31291646 ~ 31292603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_11168348_11170417 BAG1 coding CI01000004 null 11168348 ~ 11170774 (+)