XLOC_015538 (atp6v1h)


Basic Information

Item Value
gene id XLOC_015538
gene name atp6v1h
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30786773 ~ 30846927 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031061
ACGTGACACTGGTCCCGTGACGTCTTGTTGCAATTTGACAGCAGAGGAAGCAGATCCTTAAATATAAAATCTGAAGATGGACATCCGAGGGGCAGTGGACGCTGCCGTCCCCACCAATATCATTGCAGCGAAGGCCGCAGAAGTCCGAGCAAACAAGGTCAACTGGCAGTCCTACCTTCAGGGCCAAATGATCTCCGGCGAGGACTGCGAGTTCATTAAGAAGTTTGAGGTTGCTGGATCTGAGGACAAGCAAGCAATTCTGACAAACGAAGGACATCAGtgtgcaaagaccttccTCAACCTTATGGCTCATATATCTAAGGAGCAAACCGTTCAGTACATCCTGACCCTGATTGATGACACACTGCAGGAAAATCATCAGAGAGTGAATATCTTCTTTGATTATGCAAAGAAGACTAAGAATACAGCCTGGTCATACTTCCTCCCAATGCTGAACCGTCAAGACCTCTTTACTGTTCACATGGCTGCCAGAATCATAGCCAAACTGGCTGCCTGGGGACGTGACCTGATGGAAGGCAGTGACTTGAACTACTACTTCAACTGGATTAAGACCCAGCTCAGCTCTCAGAGCTCCCAGTACGTTCAGTGTGTCGCTGGCTGCCTACAGCTGATGCTGAGAGTCAATGAATACAGATTTGCCTGGGTGGAGGCCGATGGAGTGAACTGCATCACGGCAGTGCTGAGCAATAAGTGTGGCTTCCAGCTGCAGTATCAGATGATCTTCTGCGTGTGGCTCCTGGCATTCAGCCCGCAGCTCTGCGAACAGCTGCGGCGCTACAACGTGGTACCAGCCCTCTCCGACATCCTCCAAGAGTCTGTCAAAGAGAAGGTCACTCGCATAATTCTGGCTGCTTTCAGGAACCTGCTGGAGAAATCAGCCGAAAGAGAGACTCGTCAGGAGTATGCGCTTGCCATGATCCAGTGCAAAGTGCTAAAACAGCTGGAGAACCTGGACCAGCAGAAATACGATGATGAGGACATCACCGATGATATTAAATTCCTCCTGGAAAGACTGGGAGAGAGTGTTCAAGATCTCAGTTCTTTTGATGAGTACAGCTCCGAGCTGAAGTCTGGACGCCTGGAATGGAGTCCAGTGCACAAGTCAGAGAAGTTCTGGAGGGAAAACGCTGTTCGCCTGAATGAGAAGAACTACGAGCTCCTGAAGATACTGACCAGGCTGTTGGAAGTGTCTGATGACCCTCAGGTTATTGCCGTCGCAGCTCACGACGTGGGGGAATACGTGAGACATTACCCTCGCGGCAAGAGGGTGATCGAACAGCTGGGTGGTAAACAACTAGTGATGAACCACATGCATCATGAAGACCAGCTTGTCCGCTATAATGCCCTGCTGGCCGTCCAGAAGCTCATGGTGCATAACTGGGAGTACCTGGGGAAGCAGTTGCAGTCCACCGAGCAGACGACTCCGGCTGTGGCTGCACGAAGCTGAACTGCCCTGCGTTTCTGTATGAGCCTGTGTGTCTGATCCAGTGTCATTGGTGTGAATGTAAATCTGTGTTATATATATAATGAACAAGGTAAACCAAACGGTTGTTGTATTGATCCACAAATTTATGATTTAACTCTTGTGCTTTTGTCGTTGTGTTATTGTGTATTGTGCGTCCTAATAATAAAATCACGTCAAGTGATCAGGTCACAGAGTAAAATGAAATGTTATTTATGGCTTAAGTGTAAAACGATGAGTATGCATTCCAATAAAGAATCTACCACAACAAA
>TCONS_00031062
GGTCCCGTGACGTCTTGTTGCAATTTGACAGCAGAGGAAGCAGATCCTTAAATATAAAATCTGAAGATGGACATCCGAGGGGCAGTGGACGCTGCCGTCCCCACCAATATCATTGCAGCGAAGGCCGCAGAAGTCCGAGCAAACAAGGTCAACTGGCAGTCCTACCTTCAGGGCCAAATGATCTCCGGCGAGGACTGCGAGTTCATTAAGAAGTTTGAGGTTGCTGGATCTGAGGACAAGCAAGCAATTCTGACAAACGAAGGACATCAGtgtgcaaagaccttccTCAACCTTATGGCTCATATATCTAAGGAGCAAACCGTTCAGTACATCCTGACCCTGATTGATGACACACTGCAGGCTGTTGGAAGTGTCTGATGACCCTCAGGTTATTGCCGTCGCAGCTCACGACGTGGGGGAATACGTGAGACATTACCCTCGCGGCAAGAGGGTGATCGAACAGCTGGGTGGTAAACAACTAGTGATGAACCACATGCATCATGAAGACCAGCTTGTCCGCTATAATGCCCTGCTGGCCGTCCAGAAGCTCATGGTGCATAACTG
>TCONS_00031063
GTTGCAATTTGACAGCAGAGGAAGCAGATCCTTAAATATAAAATCTGAAGATGGACATCCGAGGGGCAGTGGACGCTGCCGTCCCCACCAATATCATTGCAGCGAAGGCCGCAGAAGTCCGAGCAAACAAGGTCAACTGGCAGTCCTACCTTCAGGGCCAAATGATCTCCGGCGAGGACTGCGAGTTCATTAAGAAGTTTGAGGTTGCTGGATCTGAGGACAAGCAAGCAATTCTGACAAACGAAGGACATCAGtgtgcaaagaccttccTCAACCTTATGGCTCATATATCTAAGGAGCAAACCGTTCAGTACATCCTGACCCTGATTGATGACACACTGCAGGAAAATCATCAGAGAGTGAATATCTTCTTTGATTATGCAAAGAAGACTAAGAATACAGCCTGGTCATACTTCCTCCCAATGCTGAACCGTCAAGACCTCTTTACTGTTCACATGGCTGCCAGAATCATAGCCAAACTGGCTGCCTGGGGACGTGACCTGATGGAAGGCAGTGACTTGAACTACTACTTCAACTGGATTAAGACCCAGCTCAGCTCTCAGaaACTACATGGTACAGGTGCTGAACCTGGAACAGGGACCATCTCCCCCAGTGAAAGCTCCCAGTACGTTCAGTGTGTCGCTGGCTGCCTACAGCTGATGCTGAGAGTCAATGAATACAGATTTGCCTGGGTGGAGGCCGATGGAGTGAACTGCATCACGGCAGTGCTGAGCAATAAGTGTGGCTTCCAGCTGCAGTATCAGATGATCTTCTGCGTGTGGCTCCTGGCATTCAGCCCGCAGCTCTGCGAACAGCTGCGGCGCTACAACGTGGTACCAGCCCTCTCCGACATCCTCCAAGAGTCTGTCAAAGAGAAGGTCACTCGCATAATTCTGGCTGCTTTCAGGAACCTGCTGGAGAAATCAGCCGAAAGAGAGACTCGTCAGGAGTATGCGCTTGCCATGATCCAGTGCAAAGTGCTAAAACAGCTGGAGAACCTGGACCAGCAGAAATACGATGATGAGGACATCACCGATGATATTAAATTCCTCCTGGAAAGACTGGGAGAGAGTGTTCAAGATCTCAGTTCTTTTGATGAGTACAGCTCCGAGCTGAAGTCTGGACGCCTGGAATGGAGTCCAGTGCACAAGTCAGAGAAGTTCTGGAGGGAAAACGCTGTTCGCCTGAATGAGAAGAACTACGAGCTCCTGAAGATACTGACCAGGCTGTTGGAAGTGTCTGATGACCCTCAGGTTATTGCCGTCGCAGCTCACGACGTGGGGGAATACGTGAGACATTACCCTCGCGGCAAGAGGGTGATCGAACAGCTGGGTGGTAAACAACTAGTGATGAACCACATGCATCATGAAGACCAGCTTGTCCGCTATAATGCCCTGCTGGCCGTCCAGAAGCTCATGGTGCATAACTGGGAGTACCTGGGGAAGCAGTTGCAGTCCACCGAGCAGACGACTCCGGCTGTGGCTGCACGAAGCTGA
>TCONS_00031064
tCGTTTAATTCGCTTTTTAGCCGTTTAACCTTAGCTAGCAGATCCTTAAATATAAAATCTGAAGATGGACATCCGAGGGGCAGTGGACGCTGCCGTCCCCACCAATATCATTGCAGCGAAGGCCGCAGAAGTCCGAGCAAACAAGGTCAACTGGCAGTCCTACCTTCAGGGCCAAATGATCTCCGGCGAGGACTGCGAGTTCATTAAGAAGTTTGAGGTTGCTGGATCTGAGGACAAGCAAGCAATTCTGACAAACGAAGGACATCAGtgtgcaaagaccttccTCAACCTTATGGCTCATATATCTAAGGAGCAAACCGTTCAGTACATCCTGACCCTGATTGATGACACACTGCAGGAAAATCATCAGAGAGTGAATATCTTCTTTGATTATGCAAAGAAGACTAAGAATACAGCCTGGTCATACTTCCTCCCAATGCTGAACCGTCAAGACCTCTTTACTGTTCACATGGCTGCCAGAATCATAGCCAAACTGGCTGCCTGGGGACGTGACCTGATGGAAGGCAGTGACTTGAACTACTACTTCAACTGGATTAAGACCCAGCTCAGCTCTCAGaaACTACATGGTACAGGTGCTGAACCTGGAACAGGGACCATCTCCCCCAGTGAAAGCTCCCAGTACGTTCAGTGTGTCGCTGGCTGCCTACAGCTGATGCTGAGAGTCAATGAATACAGATTTGCCTGGGTGGAGGCCGATGGAGTGAACTGCATCACGGCAGTGCTGAGCAATAAGTGTGGCTTCCAGCTGCAGTATCAGATGATCTTCTGCGTGTGGCTCCTGGCATTCAGCCCGCAGCTCTGCGAACAGCTGCGGCGCTACAACGTGGTACCAGCCCTCTCCGACATCCTCCAAGAGTCTGTCAAAGAGAAGGTCACTCGCATAATTCTGGCTGCTTTCAGGAACCTGCTGGAGAAATCAGCCGAAAGAGAGACTCGTCAGGAGTATGCGCTTGCCATGATCCAGTGCAAAGTGCTAAAACAGCTGGAGAACCTGGACCAGCAGAAATACGATGATGAGGACATCACCGATGATATTAAATTCCTCCTGGAAAGACTGGGAGAGAGTGTTCAAGATCTCAGTTCTTTTGATGAGTACAGCTCCGAGCTGAAGTCTGGACGCCTGGAATGGAGTCCAGTGCACAAGTCAGAGAAGTTCTGGAGGGAAAACGCTGTTCGCCTGAATGAGAAGAACTACGAGCTCCTGAAGATACTGACCAGGCTGTTGGAAGTGTCTGATGACCCTCAGGTTATTGCCGTCGCAGCTCACGACGTGGGGGAATACGTGAGACATTACCCTCGCGGCAAGAGGGTGATCGAACAGCTGGGTGGTAAACAACTAGTGATGAACCACATGCATCATGAAGACCAGCTTGTCCGCTATAATGCCCTGCTGGCCGTCCAGAAGCTCATGGTGCATAACTGGGAGTACCTGGGGAAGCAGTTGCAGTCCACCGAGCAGACGACTCCGGCTGTGGCTGCACGAAGCTGAACTGCCCTGCGTTTCTGTATGAGCCTGTGTGTCTGATCCAGTGTCATTGGTGTGAATGTAAATCTGTGTTATATATATAATGAACAAGGTAAACCAAACGGTTGTTGTATTGATCCACAAATTTATGATTTAACTCTTGTGCTTTTGTCGTTGTGTTATTGTGTATTGTGCGTCCTAATAATAAAATCACGTCAAGTGATCAGGTCACAGAGTAAAATGAAATGTTATTTATGGCTTAAGTGTAAAACGATGAGTATGCATTCCAATAAAGAATCTACCACAACAAATGTGTTGTTTCGCTTCTTTTttccatttgaatttcaaatgtTCATTCAAAATTC
>TCONS_00031065
CGTGTAcgtgtatttttcttttggacCTGTACAGAGCTCCCAGTACGTTCAGTGTGTCGCTGGCTGCCTACAGCTGATGCTGAGAGTCAATGAATACAGATTTGCCTGGGTGGAGGCCGATGGAGTGAACTGCATCACGGCAGTGCTGAGCAATAAGTGTGGCTTCCAGCTGCAGTATCAGATGATCTTCTGCGTGTGGCTCCTGGCATTCAGCCCGCAGCTCTGCGAACAGCTGCGGCGCTACAACGTGGTACCAGCCCTCTCCGACATCCTCCAAGAGTCTGTCAAAGAGAAGGTCACTCGCATAATTCTGGCTGCTTTCAGGAACCTGCTGGAGAAATCAGCCGAAAGAGAGACTCGTCAGGAGTATGCGCTTGCCATGATCCAGTGCAAAGTGCTAAAACAGCTGGAGAACCTGGACCAGCAGAAATACGATGATGAGGACATCACCGATGATATTAAATTCCTCCTGGAAAGACTGGGAGAGAGTGTTCAAGATCTCAGGTAAAGATTGTAAGATTGATTTCGACTTTTGCGTTAAGTGGTCATCATACACTATGACGCATAACTTGCATGTACCCGAAGCCGCTGTAgatatttatacttctgcgttctCTCTGTGCTGCTCTGGGAATAATGCAATATCAATAATAACGTTAGCAGGCAGTGGGGTTTCTGTGTTTcactgtgtcgagtttctttgctggtgtttacTCC

Function

symbol description
atp6v1h Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in eye pigmentation and positive regulation of neural retina development. Acts upstream of or within animal organ development and pigmentation. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and trigeminal placode. Used to study osteoporosis. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H).

GO:

id name namespace
GO:0060348 bone development biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0030282 bone mineralization biological_process
GO:0043473 pigmentation biological_process
GO:0006811 ion transport biological_process
GO:0048069 eye pigmentation biological_process
GO:0061075 positive regulation of neural retina development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021219-2 Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in eye pigmentation and positive regulation of neural retina development. Acts upstream of or within animal organ development and pigmentation. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and trigeminal placode. Used to study osteoporosis. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H).

Ensembl:

ensembl_id ENSDARG00000006370

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031061 False 1755 mRNA 0.48 13 30786773 30846873
TCONS_00031062 False 564 nonsense_mediated_decay 0.51 6 30786783 30832975
TCONS_00031063 False 1496 mRNA 0.51 14 30786799 30846586
TCONS_00031064 False 1851 mRNA 0.47 14 30787128 30846927
TCONS_00031065 True 717 lncRNA 0.48 3 30808329 30822212

Neighbor

gene id symbol gene type direction distance location
XLOC_015537 tcea1 coding upstream 38703 30739680 ~ 30748070 (+)
XLOC_015536 si:dkey-94e7.2 coding upstream 60353 30721070 ~ 30726420 (+)
XLOC_015535 ankrd33bb coding upstream 238553 30531726 ~ 30548220 (+)
XLOC_015534 march6 coding upstream 260052 30489846 ~ 30526721 (+)
XLOC_015533 atpsckmt coding upstream 303564 30480907 ~ 30483209 (+)
XLOC_015539 oprk1 coding downstream 31937 30878864 ~ 30886567 (+)
XLOC_015540 chmp5a coding downstream 47668 30894595 ~ 30901120 (+)
XLOC_015541 bag1 coding downstream 57142 30904069 ~ 30908300 (+)
XLOC_015542 myom1a coding downstream 69261 30916188 ~ 30959913 (+)
XLOC_015543 lpin2 coding downstream 113424 30960351 ~ 30984508 (+)
XLOC_015527 NA non-coding upstream 452260 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 506269 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 509711 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 516610 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 589032 30197370 ~ 30197741 (+)
XLOC_015544 NA non-coding downstream 228649 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 non-coding downstream 253517 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 non-coding downstream 254161 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 non-coding downstream 261002 31107929 ~ 31108414 (+)
XLOC_015549 NA non-coding downstream 444719 31291646 ~ 31292603 (+)

Expression


Co-expression Network