XLOC_015533 (atpsckmt)


Basic Information

Item Value
gene id XLOC_015533
gene name atpsckmt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30480907 ~ 30483209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031049
ACATGTCTATCGTCTCGTCAAAAACCCGTTGACGTTTTGTGGTAGTTTTAAAAATATCAGTGCAATAAATAGACCATATATTAATTTGTATATTGCCATGATTGCACCATTAAATCAGTACAATGATTTGCTGTTTACTCGTGTGACCGCTTTAATTACAACTGTATAAAAAGCTGCGTGCATTCAGTGAGGAGGTCACTGCTGGTTTTCATTCCAGCATGTCTGAGATGACAGAATCAGATTTGTCCACAGACTCTTATAAGCATGGATCATCCGGTGAAGGTTCTTTTAAAAAACGACTGGGTATTATTGCAACTTGTGTCGTGGGAGGCTCGTTGGTGGCTCTGTATGCGGTGACCGGTCCGTTTGTTGCACCAGCACTGAGGAAAGTTTGTCTTCCGTTCGTACCCGCAACCGGGACACAGTTAGaaaatgttttcagtgttttaaaagGTAGATCAGGGTCCCTGGTGGATATCGGAAGCGGAGATGGACGGATAGTGATTGCTGCTGCAAAACGAGGCTTTAAGGCAGTTGGCTTTGAACTGAACCCATGGCTGGTGTGGTACTCCCGTTACAAAGCCTGGAGGGAAGGTGTTCATCACACCACATCTTTTTATATTTCAGACCTTTGGAAGTTTTTCAGAGTACACCAACGTGGTCATCTTTGGGGTACCTCAAAtgATGGAGCAGCTTGAAGTCAAACTCCAAACAGAGCTCCAGAGTTCAGCCAAAGTAGTAGCTTGTCGCTTTCCTTTTCCCACTTGGACTCCTaatgatgtagctggagaagggATTGACACTGTTTGGGTCTATAATGCCAAAACATTCAAACTTCTCATTAGAAATGATAAAGACAGTGAAAGACAAGAGGTGTCACTTCAGTAGCGGTGAACTACAACACCAGTTGCTTCTTTCTTCACAACATTTGTCTGTTATGTAAGCTTGTAACATTCAATTTTGAATTTAACATATGGCTGTCCTCTGTTTTAGTATAATATTCcttattaaaaaaagtatttgggGAATTTG
>TCONS_00031050
AACCCGTTGACGTTTTGTGGTAGTTTTAAAAATATCAGTGCAATAAATAGACCATATATTAATTTGTATATTGCCATGATTGCACCATTAAATCAGTACAATGATTTGCTGTTTACTCGTGTGACCGCTTTAATTACAACTGTATAAAAAGCTGCGTGCATTCAGTGAGGAGGTCACTGCTGGTTTTCATTCCAGCATGTCTGAGATGACAGAATCAGATTTGTCCACAGACTCTTATAAGCATGGATCATCCGGTGAAGGTTCTTTTAAAAAACGACTGGGTATTATTGCAACTTGTGTCGTGGGAGGCTCGTTGGTGGCTCTGTATGCGGTGACCGGTCCGTTTGTTGCACCAGCACTGAGGAAAGTTTGTCTTCCGTTCGTACCCGCAACCGGGACACAGTTAGaaaatgttttcagtgttttaaaagGTAGATCAGGGTCCCTGGTGGATATCGGAAGCGGAGATGGACGGATAGTGATTGCTGCTGCAAAACGAGGCTTTAAGGCAGTTGGCTTTGAACTGAACCCATGGCTGGTGTGGTACTCCCGTTACAAAGCCTGGAGGGAAGGTGTTCATCACACCACATCTTTTTATATTTCAGACCTTTGGAAGGTGAGAACTGGTCAGTTTTTCAGAGTACACCAACGTGGTCATCTTTGGGGTACCTCAAAtgATGGAGCAGCTTGAAGTCAAACTCCAAACAGAGCTCCAGAGTTCAGCCAAAGTAGTAGCTTGTCGCTTTCCTTTTCCCACTTGGACTCCTaatgatgtagctggagaagggATTGACACTGTTTGGGTCTATAATGCCAAAACATTCAAACTTCTCATTAGAAATGATAAAGACAGTGAAAGACAAGAGGTGTCACTTCAGTAGCGGTGAACTACAACACCAGTTGCTTCTTTCTTCACAACAT
>TCONS_00031051
ATGTCTGAGATGACAGAATCAGATTTGTCCACAGACTCTTATAAGCATGGATCATCCGGTGAAGGTTCTTTTAAAAAACGACTGGGTATTATTGCAACTTGTGTCGTGGGAGGCTCGTTGGTGGCTCTGTATGCGGTGACCGGTCCGTTTGTTGCACCAGCACTGAGGAAAGTTTGTCTTCCGTTCGTACCCGCAACCGGGACACAGTTAGaaaatgttttcagtgttttaaaagGTAGATCAGGGTCCCTGGTGGATATCGGAAGCGGAGATGGACGGATAGTGATTGCTGCTGCAAAACGAGGCTTTAAGGCAGTTGGCTTTGAACTGAACCCATGGCTGGTGTGGTACTCCCGTTACAAAGCCTGGAGGGAAGGTGTTCATCACACCACATCTTTTTATATTTCAGACCTTTGGAAGGTCAGTTTTTCAGAGTACACCAACGTGGTCATCTTTGGGGTACCTCAAAtgATGGAGCAGCTTGAAGTCAAACTCCAAACAGAGCTCCAGAGTTCAGCCAAAGTAGTAGCTTGTCGCTTTCCTTTTCCCACTTGGACTCCTaatgatgtagctggagaagggATTGACACTGTTTGGGTCTATAATGCCAAAACATTCAAACTTCTCATTAGAAATGATAAAGACAGTGAAAGACAAGAGGTGTCACTTCAGTAGCGGTGAACTACAACACCAGTTGCTTCTTTCTTCACAACATTTGTCTGTTATGTAAGCTTGTAACATTCAATTTTGAATTTAACATATGGCTGTCCTCTGTTTTAGTATAATATTCcttattaaaaaaagtatttgggGAA

Function

symbol description
atpsckmt Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine trimethylation; positive regulation of proton-transporting ATP synthase activity, rotational mechanism; and regulation of mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within methylation. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human ATPSCKMT (ATP synthase c subunit lysine N-methyltransferase).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:1905273 positive regulation of proton-transporting ATP synthase activity, rotational mechanism biological_process
GO:0018023 peptidyl-lysine trimethylation biological_process
GO:1905706 regulation of mitochondrial ATP synthesis coupled proton transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016279 protein-lysine N-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-90 Predicted to enable protein-lysine N-methyltransferase activity. Predicted to be involved in peptidyl-lysine trimethylation; positive regulation of proton-transporting ATP synthase activity, rotational mechanism; and regulation of mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within methylation. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human ATPSCKMT (ATP synthase c subunit lysine N-methyltransferase).

Ensembl:

ensembl_id ENSDARG00000033451

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031049 False 1032 mRNA 0.42 4 30480907 30483209
TCONS_00031050 False 921 mRNA 0.43 4 30480929 30483105
TCONS_00031051 True 815 mRNA 0.43 4 30481125 30483205

Neighbor

gene id symbol gene type direction distance location
XLOC_015532 neto1 coding upstream 452 30463825 ~ 30480455 (+)
XLOC_015531 socs6b coding upstream 50562 30423428 ~ 30430345 (+)
XLOC_015530 crispld1b coding upstream 84914 30379650 ~ 30395993 (+)
XLOC_015529 pi15b coding upstream 104511 30368800 ~ 30376396 (+)
XLOC_015527 NA coding upstream 146394 30329405 ~ 30334513 (+)
XLOC_015534 march6 coding downstream 6637 30489846 ~ 30526721 (+)
XLOC_015535 ankrd33bb coding downstream 48517 30531726 ~ 30548220 (+)
XLOC_015536 si:dkey-94e7.2 coding downstream 237861 30721070 ~ 30726420 (+)
XLOC_015537 tcea1 coding downstream 256471 30739680 ~ 30748070 (+)
XLOC_015538 atp6v1h coding downstream 303564 30786773 ~ 30846927 (+)
XLOC_015525 CR788254.3 non-coding upstream 200403 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 203845 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 210744 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 283166 30197370 ~ 30197741 (+)
XLOC_015544 NA non-coding downstream 592367 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 non-coding downstream 617235 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 non-coding downstream 617879 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 non-coding downstream 624720 31107929 ~ 31108414 (+)
XLOC_015549 NA non-coding downstream 808437 31291646 ~ 31292603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_10898933_10902376 FAM173B coding CI01000004 null 10898933 ~ 10902703 (+)