XLOC_015531 (socs6b)


Basic Information

Item Value
gene id XLOC_015531
gene name socs6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30423428 ~ 30430345 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031045
GAGTGAGCGGTGTTCCAGACGAGCATCAAAGATCTCCTCCCTCCTTCACGTTCACTCCCATGATGCAACAGCAAACAAAGAGGGCAGAGAAAGAGGCAGCGCCAGCAGAAACGGCTGCTAGCTAGGAAAAAAGTTTTAAACGCTGAATATAGGCACAATTCAAAACTCTCCCAGCGTAAGGTGTTACTTTATCGCAAAACGCGGCCCTTAAGTGCCCATTATTCCTCGTGACAGTCGAAAGTGAGTTCGTTTCTGCGCTGTTTTTGCAAGTGCAGGTATCAGCTAGCTGTGAAATCATAATGAACCCTAGGGTGATTTCATAGCTCTTCGGACACTAATATGAAAACTCCTGTTAGTTGACAGTGTATTCAAGGCTCGGCAGGTATGGCAGTTGGTGGCCACATGTGATCAGCTATGTGTAAGTGTTCACAATCATCTCCCTCATCCCAGGAACATCACGCATAATCCCCctttaaattattaagggggatCTTTCAGAATGAAGAAGATAAGTCTGAAGACAATAAGGAAGTCGTTTAACATTAAAGGCAAAGAAGAGAGTGAATATGCTGTATCGCAGCCAGACCTGGCAGCCAGTTTTTCTGCTGAAGACTCTCTGTTTGGAGGGTGCTACAGCAAAGATCTCGTCAGCAGCGACCTGGATAATGAGGACGAAAAAAGATCCAAAGTCCGATCTAAGAGCGAGGGTCTCATGGGCACCTTGAAAAGAAGACTATCAGCAAAACAGAAACCAAAGGTCAAGGGTGGTTCTCCATCTGTATGCTCTATAGATGACGACACCTTCTCCTCCTCTTCAGCACCCATTAGTCTCAGTGACTTAAAATCCCAGCGTTCCTCCCGCTCCACATCCGTCCATAGTCATCATTACAGTCCCACCCCGTGGCCTCTCAGACCAGTTAACTCGGAGGAGACATGCATTAAAATGGACGTTAAAGCATTAATGAACTCCTCAGATCCTAGTTCGACACTCAACAGTGTCCACCAAGACTTCCTGGACCTCCAGAGAGAGTTCGGAGAATCAAGTGATTCATTCAGAATCACCACGCGTGTGCCAGACCACCATTCCGCCACTCAAAATGGCGATTTGCACCTTGATATGGATGAACATGTGCCTGTAGTCCTTGGTCTTGCAGCTCAGGATTATATTCAGTACACAATGCCTTTAGATGATGGACTCTATCCTGATGATGAAGGTTCCCGCTCTTTTTGCTTAGATGCCACCACGCCCATGGATATCGTTCCGCAGTCAGAGGGATGTGGATCTCTTCATCAAGATGAAGAACCAATTGACCAGGACCTCCTGTCACCAGATATATTCATGGAGTCATCATCGGTGAACCAACTCTTTTTAAACACTGCAAATGTCTTGCTGCAGGGCTCCAGACTCGAAGCCCCTCTTTCCCCCTTGCTACCTCCGTTGCCCGATAGTTATCTCCAGAGAAGCTTCTCTGGATTTGCTGGTACACACGCTCAGGTTGCAGAGAGAGTCATGCACCATCTCAACTTTGACCCCAACTCGGCTCCAGGGGTGCAGAGGGTCTATGATGCTGTGCAGAACAGTGGGCCTATGGTGGTTACCAGTCTCACAGCTGAGCTGAAGAAACTTGCCAAGCAGGGTTGGTATTGGGGTCCCATCACCAGATGGGAGGCTGAAGAAAAGCTGACAAATCTTCCAGATGGTTCTTTTTTAGTCCGCGACAGTTCTGATGATCGGTATCTCCTTAGCTTGAGCTTTCGCTCACAAACCAAGACTCTCCATACTCGAATCGAGCACTCGAATGGCAGTTTCAGCTTCTATGAACAGCCTGACATTGAAGGCCACGTATCCATCGTGGATCTCATTGATAATTCAGTCAAGGATTCGGAAAATGGAGCGTTCTGCTATTCCAGATCTCGCTTACCAGGGTCCGCCACTTACCCCGTTAGACTGACCAATCCCGTTTCAAGGTTTATGCAAGTGCGCTCGCTGCAGTACTTGTGCCGATTTGTTATCCGTCAGTACACACGGATAGATCTGATCCAGAAATTGCCTTTACCGAACAAAATGAAAGATTACCTGCAGGAAAAGCACTACTGAATGCTGTATCCTGACTTGGTTGCTACTTGCACTTTTTTGGAGGACACAACAAAGCAGGTTTTGCTTACCTACAGAGTTTTGTTACCATTCAGTTATGTGTTTTGTTGAAAGAAAAGCTGGTGTTTGTCAGTCTGGTGTAGAGTAATTAATTCGGTGGTTTGTGAAGAGAAGCAATGCCAGAATGTTGTTATGAGTGTTTGGATTTCAGTGTTAGAGCATTTTTCGCATGTACTCtgtgtactgtagcattttattTCTGTTACAGTCAAAGACAGTCCAGTATTTTCAGCATATCCCACAGTATGAAATATCAGCACACAACATAAAGCTCCAGCTTACTGTAGGGCATTTAGAGTTTCTTGGCAACAATGCACAGTGGTCTAGATGCCTTAATAATGGCCGCACGTTTGTGAATGCGTAGATTACATTCCTCCTCGCCGCTTTTTGGAACACAAATTCTGTCGTACTAGCCATTGTTATGTCATGACCTTATTCAAAGGGAAAATGTACTACACAAAATGCCAAATGATGTCCTGTCACCCTTCTGTGGAGTTCCTGTAATAAGCTATATTAGCTGCTCATATACGTGTCTGATCATATTCTCACCCCTTGTGTTTTGCATTCTTTAGCACACGTGATGCCAAGTTTAGGTGCCTCGCTGGAACTCGTCTTTGCTGTAGTTAATTGATTTTGGACTGTATGATTTGTTGTGTATAACAGTCATCTTTTAACAGGCATGCAGTTACGTTGTAAGCACATATGGTCTTTCCCCCCTTGCATTGCATTTTAAGTGTTCATTAGAATTGTTTATCACTGTTTGAAACAGAACGTTTTCCTGTAATGGACTATGTCAATGGTACAGTTTAAAATCATCTCTTTTTGGGAACAGAATTTGCTTACTGATATGTTGGAACTTGAACTTGTTCTCTagttcaaaataaacattttatatgatTAA

Function

symbol description
socs6b Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within several processes, including intracellular signal transduction; negative regulation of signal transduction; and protein ubiquitination. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS6 (suppressor of cytokine signaling 6).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0040008 regulation of growth biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0046935 1-phosphatidylinositol-3-kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1670 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within several processes, including intracellular signal transduction; negative regulation of signal transduction; and protein ubiquitination. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS6 (suppressor of cytokine signaling 6).

Ensembl:

ensembl_id ENSDARG00000015863

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031045 True 3056 mRNA 0.44 2 30423428 30430345

Neighbor

gene id symbol gene type direction distance location
XLOC_015530 crispld1b coding upstream 27435 30379650 ~ 30395993 (+)
XLOC_015529 pi15b coding upstream 47032 30368800 ~ 30376396 (+)
XLOC_015527 NA coding upstream 88915 30329405 ~ 30334513 (+)
XLOC_015526 si:dkey-82k12.13 coding upstream 137179 30281444 ~ 30286249 (+)
XLOC_015525 CR788254.3 coding upstream 142924 30277334 ~ 30280504 (+)
XLOC_015532 neto1 coding downstream 33480 30463825 ~ 30480455 (+)
XLOC_015533 atpsckmt coding downstream 50562 30480907 ~ 30483209 (+)
XLOC_015534 march6 coding downstream 59501 30489846 ~ 30526721 (+)
XLOC_015535 ankrd33bb coding downstream 101381 30531726 ~ 30548220 (+)
XLOC_015536 si:dkey-94e7.2 coding downstream 290725 30721070 ~ 30726420 (+)
XLOC_015524 CR788254.1 non-coding upstream 146366 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 153265 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 225687 30197370 ~ 30197741 (+)
XLOC_015544 NA non-coding downstream 645231 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 non-coding downstream 670099 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 non-coding downstream 670743 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 non-coding downstream 677584 31107929 ~ 31108414 (+)
XLOC_015549 NA non-coding downstream 861301 31291646 ~ 31292603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_10867891_10869483 SOCS6B coding CI01000004 null 10867660 ~ 10870925 (+)
bowfin (Amia calva) AMCG00019460 NA coding CM030124.1 CM030124.1 21331262 ~ 21331771 (+)