XLOC_015536 (si:dkey-94e7.2)


Basic Information

Item Value
gene id XLOC_015536
gene name si:dkey-94e7.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30721070 ~ 30726420 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031056
CGATTTCTAATCCACACCGATGCACTGCGGCTCACACTGAACAAAGCATTGTCTTTCAGTGCAGTATCTGTGAACAACTCCAGAGGGAAGTCATGTGTTGCCTTTAGAGAGCAAGATGGCCAACATATACACTCTGAGAGACTTTTTCGGCGGTCAGTGGTCATCTAATGCACGACTGGATGATAAAACAATCATTATCACTGGAGCAAATACTGGCATTGGAAAAGAAACAACAAAAGACCTGGCAAAACGCGGTAGCACGTTTATCTTAGTCTTTACAGCAGCTACTTCTTGTAATGTAGATCAGATTTTAAAGCAGAAACATCAAAAATGTTTGGTTTGGGGACACCAATTATAAAAGTCATGTGTTGTGGAGTTGTTCTACAGGGCCCAGGATAATAATGGCTTGCAGAGATGTTGAAAAAGCAGAAAGAGCACAAAGAGAAATCATGGAAGAATCAGGCAACCAAAACATTGTGATCAGGAAACTAGACTTATCTGACACCAGATCAATCAGAGAATTTGCTGAGGTTATCAACAGCGAGGAGAGAAGTCTTCACTTACTTATAAATAATGCTGGGGTCATGATGTGTCCCTACTCCAAGACAGCAGACGGTTTTGAGATGCAATTTGGTGTCAACCACTTAGGTCACTTCCTGTTAACCTTCCTGCTGATCGACCTGCTGAAGAGATCGGCCCCCTCCAGAATCATCAACCTTTCATCCATGGCTCACAGTTGGGGTACAATAACACTTGATGATATCAACAGTGAGAGGAATTACCACAGCAGGAGGGCATATGGTCAAAGTAAACTGGCCAACATTCTTTTCACTCGCTCATTGGCCAAAAAACTCAAGGACACAGGTGTCACATCATATGCAGTCCATCCGGGAATTGTGCGAACTGAACTTAAAAGGCATATGAATCTCGGACTTCTGATCATGTGGAAAGTTGTCAGGCCTTTCACAAAGACCCCGGTACAGGGAGCACAAACTACCATCTACTGTGCAGTGCAGCCAGAGTTAGACGCAGAGAGCGGTGGATACTACAGTGACTGCAGACCTTCAAGATGCACCAGAGCTGCTAGAGATGATGAAATGGCTGAGAAACTTTGGGAGCTCAGTTGCAATATGCTGGGAATACTCTGGGATTGAGTGCAAGGAGTGCAATTTTCTTTGTTTTGCATTGACAATTCAGTGTACCCATGAAAAATACCCAATTTTATtgcatataaataaagtaaaaatgccACTACACAAACCTTAATAACAAAtcaacatctttttttattttatagtttaatttCCAACAATGTACTTAATTAAAAATGATAGCTTTCCAGTCTCacaaaacaataatcatttcAAAATCATTTGAAATACAACTCTGTTTGCATTAtgaaatgaaaacattattgaCAGCAGTCACAATAGTGTAGAATTACATTTTATGGCAAGCACGTCACACTTCCCCTACACTGGCATTTAACCTTTGACCTTCGACAGACAATATTTCATTAAACCAATGAtctcaaactcaatccctgggggtccgcagctctgcatagtttagctccaaccacttcCAACTCACATCTGCTTAGTAGTCTCAAGTTGTCTTGAACACCTTgcttatttggatcagctgtgtttgataagggttggagcaaaactgtgcagagctgcagccctccaggaatccagtttgagacctatgctttaaacCCTGCACTGCTTAACAACTGTTTCACCAGTTTAAACTTACAAATGTAAGTTTAAACTGTAAGAAGACACCCCAACTCGTGTTAATCCCCTTATCGGGGAATACAGAGAAGTTGGGGTTTGAACGAAGTGTCTAacccggccccagaacgctccccccgggTATATAATGTTTAAAAGGTGAGGTGTCGGGGTGGTGGATGGATGCTAAAGTTGTAAAATAATGcagatacactgcaaaaaatgctttttttacttagattttttgtcttgtttctattccaaatatctgaaaattcctaACTCAAGAAGAAtgttctagacaagaaaaacatattttcttgttttgagaaataatatgccaataataagtgagtttttccttaaaacaagcaaaataatctgccaatggggtaagcaaaataatcttacgtcaaaagaaaaaacaagattattttgcttaccccattagaagattattttgcttgttttaaggaaaaactgacttaatattggcatattatttctcaaaatgagacaatatgttttgcttttctagaaaatgcttcttgatattagaaattttagatatttagactagaaacaagacaaaaaatctaagcaagaaaagcattttttgcagtgtaggacAGCTTTTggtatttataggggtttggtctAATACTGATTGGATAATAAAATGATTGTCGTTGACGTATAGAATTGCTAAAacatctgcgcatgctcctcctgaaatttgttaaaataacactttgtgAGAATTAGGCTTTTGTCCTCACATTCAAAAACCCTCTGAAGAAGCCATGTCTATACTTTTatctcttttgtttttattctgttcatctatttttttttttcttgttcggTTTGCAATGCACTGTTTCAGTgacctaaaatatttaaaaataaaaagaacagtTATGTGCAAAATACTATTCGTAATATACATATCCAAATGTGATCAATATACAAATTCGTATAAATGCTGTATATCATTTTATAAGATAGATCCTAGAGGTTATTAGTGTATGTTTAATTTGATCTCCTAGTTATCAGCACAATAAAAAGAATTCATCTC
>TCONS_00031057
GATTTCTAATCCACACCGATGCACTGCGGCTCACACTGAACAAAGCATTGTCTTTCAGTGCAGTATCTGTGAACAACTCCAGAGGGAAGTCATGTGTTGCCTTTAGAGAGCAAGATGGCCAACATATACACTCTGAGAGACTTTTTCGGCGGTCAGTGGTCATCTAATGCACGACTGGATGATAAAACAATCATTATCACTGGAGCAAATACTGGCATTGGAAAAGAAACAACAAAAGACCTGGCAAAACGCGGTAGCACGTTTATCTTAGTCTTTACAGCAGCTACTTCTTGTAATGTAGATCAGATTTTAAAGCAGAAACATCAAAAATGTTTGGTTTGGGGACACCAATTATAAAAGTCATGTGTTGTGGAGTTGTTCTACAGGGCCCAGGATAATAATGGCTTGCAGAGATGTTGAAAAAGCAGAAAGAGCACAAAGAGAAATCATGGAAGAATCAGGCAACCAAAACATTGTGATCAGGAAACTAGACTTATCTGACACCAGATCAATCAGAGAATTTGCTGAGGTTATCAACAGCGAGGAGAGAAGTCTTCACTTACTTATAAATAATGCTGGGGTCATGATGTGTCCCTACTCCAAGACAGCAGACGGTTTTGAGATGCAATTTGGTGTCAACCACTTAGGTCACTTCCTGTTAACCTTCCTGCTGATCGACCTGCTGAAGAGATCGGCCCCCTCCAGAATCATCAACCTTTCATCCATGGCTCACAGTTGGGGTACAATAACACTTGATGAT
>TCONS_00031058
AGACTTTTTCGGCGGTCAGTGGTCATCTAATGCACGACTGGATGATAAAACAATCATTATCACTGGAGCAAATACTGGCATTGGAAAAGAAACAACAAAAGACCTGGCAAAACGCGGGCCCAGGATAATAATGGCTTGCAGAGATGTTGAAAAAGCAGAAAGAGCACAAAGAGAAATCATGGAAGAATCAGGCAACCAAAACATTGTGATCAGGAAACTAGACTTATCTGACACCAGATCAATCAGAGAATTTGCTGAGGTTATCAACAGCGAGGAGAGAAGTCTTCACTTACTTATAAATAATGCTGGGGTCATGATGTGTCCCTACTCCAAGACAGCAGACGGTTTTGAGATGCAATTTGGTGTCAACCACTTAGGTCACTTCCTGTTAACCTTCCTGCTGATCGACCTGCTGAAGAGATCGGCCCCCTCCAGAATCATCAACCTTTCATCCATGGCTCACAGTTGGGGTACAATAACACTTGATGATATCAACAGTGAGAGGAATTACCACAGCAGGAGGGCATATGGTCAAAGTAAACTGGCCAACATTCTTTTCACTCGCTCATTGGCCAAAAAACTCAAGGGTGTCACATCATATGCAGTCCATCCGGGAATTGTGCGAACTGAACTTAAAAGGCATATGAATCTCGGACTTCTGATCATGTGGAAAGTTGTCAGGCCTTTCACAAAGACCCCGGTACAGGGAGCACAAACTACCATCTACTGTGCAGTGCAGCCAGAGTTAGACGCAGAGAGCGGTGGATACTACAGTGACTGCAGACCTTCAAGATGCACCAGAGCTGCTAGAGATGATGAAATGGCTGAGAAACTTTGGGAGCTCAGTTGCAATATGCTGGGAATACTCTGGGATTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-611 No description available

Ensembl:

ensembl_id ENSDARG00000068474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031056 False 2820 mRNA 0.38 6 30721070 30726420
TCONS_00031057 False 760 lncRNA 0.43 4 30721071 30724156
TCONS_00031058 True 877 mRNA 0.45 6 30721466 30724754

Neighbor

gene id symbol gene type direction distance location
XLOC_015535 ankrd33bb coding upstream 172850 30531726 ~ 30548220 (+)
XLOC_015534 march6 coding upstream 194349 30489846 ~ 30526721 (+)
XLOC_015533 atpsckmt coding upstream 237861 30480907 ~ 30483209 (+)
XLOC_015532 neto1 coding upstream 240615 30463825 ~ 30480455 (+)
XLOC_015531 socs6b coding upstream 290725 30423428 ~ 30430345 (+)
XLOC_015537 tcea1 coding downstream 13260 30739680 ~ 30748070 (+)
XLOC_015538 atp6v1h coding downstream 60353 30786773 ~ 30846927 (+)
XLOC_015539 oprk1 coding downstream 152444 30878864 ~ 30886567 (+)
XLOC_015540 chmp5a coding downstream 168175 30894595 ~ 30901120 (+)
XLOC_015541 bag1 coding downstream 177649 30904069 ~ 30908300 (+)
XLOC_015527 NA non-coding upstream 386557 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 440566 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 444008 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 450907 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 523329 30197370 ~ 30197741 (+)
XLOC_015544 NA non-coding downstream 349156 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 non-coding downstream 374024 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 non-coding downstream 374668 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 non-coding downstream 381509 31107929 ~ 31108414 (+)
XLOC_015549 NA non-coding downstream 565226 31291646 ~ 31292603 (+)

Expression


Co-expression Network