Fish Transcriptome and Expression Database

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model fish

XLOC_015634 (trdj2)

Basic Information

Item	Value
gene id	XLOC_015634
gene name	trdj2
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007113.7
NCBI id	CM002886.2
chromosome length	59640629
location	36088658 ~ 36088717 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031206
CATTTTCAGCTACTGATCCTTTAACATTCGGCAAACCGATCACCCTCACGGTAATACCAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000099028

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00031206	True	60	TR_J_gene	0.43	1	36088658	36088717

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_015633	trdj1	coding	upstream	179	36088431 ~ 36088479 (+)
XLOC_015632	BX681417.25	coding	upstream	879	36087769 ~ 36087779 (+)
XLOC_015631	smg7	coding	upstream	8751	36046126 ~ 36079907 (+)
XLOC_015630	lamc2	coding	upstream	67050	36004381 ~ 36021608 (+)
XLOC_015629	lamc2	coding	upstream	86673	35991137 ~ 36001985 (+)
XLOC_015635	trdc	coding	downstream	943	36089660 ~ 36090680 (+)
XLOC_015636	BX681417.2	coding	downstream	4236	36092953 ~ 36094319 (+)
XLOC_015637	si:dkey-161l11.67	coding	downstream	6277	36094994 ~ 36095056 (+)
XLOC_015638	si:dkey-161l11.74	coding	downstream	6689	36095406 ~ 36095465 (+)
XLOC_015639	traj2	coding	downstream	7188	36095905 ~ 36095967 (+)
XLOC_015626	BX571812.1	non-coding	upstream	257213	35831329 ~ 35831445 (+)
XLOC_015623	NA	non-coding	upstream	474360	35612555 ~ 35614298 (+)
XLOC_015619	FP236741.1	non-coding	upstream	507367	35512002 ~ 35581291 (+)
XLOC_015618	NA	non-coding	upstream	585725	35482156 ~ 35502933 (+)
XLOC_015616	NA	non-coding	upstream	873171	35146296 ~ 35215487 (+)
XLOC_015646	BX681417.3	non-coding	downstream	10252	36098969 ~ 36099028 (+)
XLOC_015685	BX681417.1	non-coding	downstream	28677	36117394 ~ 36117456 (+)
XLOC_015702	NA	non-coding	downstream	91526	36180243 ~ 36583275 (+)
XLOC_015703	NA	non-coding	downstream	156205	36244922 ~ 36247469 (+)

Expression

Co-expression Network