XLOC_015630 (lamc2)


Basic Information

Item Value
gene id XLOC_015630
gene name lamc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36004381 ~ 36021608 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031199
ATGTGCCCTAGGGGTTATTACGTGAACCGCCAACTGTCCAACTCCTGCCAGAAGTGTCCCTGTCGCGAGGGTGATTCTTGCTATGTGATTGGAGGAACACAGGAGGTGACGTGCACCCGCTGTCCTCGTGGGACTACAGGTTCCCGTTGTGAAATCTGTGATGATGGTTTTTATGGAGACCCTCTGGGAGAATACGGCCCTCGCAAACAGTGCCAGCCCTGCCAGTGTTATGGCCACGTGGACCAGAACGCTGTGGGCAACTGTGACCGGCGAACAGGGCAGTGCCGGAAGTGCCTGAACCACAGCACTGGCCCCAACTGTGAATACTGTGAAGCTGGATACCACCACAACTACCCCACAGAGCCATGCCAGGCTTGTAACTGCAACCGACAGGGTTCTGTGTCCAATTCATGCAGTGATAAAGGCCAGTGCGAGTGTAAGGAAGGATATGATGGACTTAGGTGTGAAGAATCAACATGTCCATCCTGCTTTAATCCAGTTAAGAGCAAGATAGAGGTCTATGCACGCCAGCTGCAGGAAATGGAGGATTTATTTAAGGGATTTGGAGGTAATGAAGCTCCGGTCAGCGATGCTCAGATGGACCAGGCTGTTCGGGCAGCAGAAGTCATGGTCCGAAACCTGGAGAGCAGAGCAAACGAACTCACAAACACGGAGAAACAGCTTCAGGATAAACTGGCGAGCATTAGCCGATCTCAGCTGAGGGAGGATAGAAACATGGAGGCTTTGTTGACAAGCGTGAATGGGATCAGAAACAATGATCAACAGTACAGGACAGAAGTTTCCGAAATCCGTAAACTCATCAGTGACGTCAGGTCAAAGCTGCAGCAGGCCAAACGGGACATGCAGGAGATTGAGATTCCCTCAGGTGATGCTGTGCCAGGCTCTGGCACCTTGTCTGATCTGGTTCAGAGAGCTGCTGATCTTGCTGAGCAGCACCAGGGTGAAGCATTGACGGTGGAGGGCATTGCAGACAATTCTCTGGCCCAATCGGAGAAAGCCCTGGACCTCATTCGAGGCATCATCAACCGAGAAAATAAGGTCAAAGACGAGATCAGGGACCTCAAAAGAGAGTATGAAGCGGATGTAAATAAAGTGCTTGACATGGACAGAAAGGCCAATCAACTAACTGATGCAGCTGGAAAGGAGAGCGGAGAGGCTCAGAATGCTCTTCAACAGTTATCTGACCTGGAGAAGAAACTTCCAAAGCCTCTCACGAAGGAGATTGCTGGTGTGGTTTCCATGTTCGATAATCTGAAGGGTCTGGTGGAGGGAAACCTATCGCAGTACAGTGACCTACAGCAGTATATGCTCAATGAGCAGAAAGAGACAGGGGATCTGTTAATCAAGGCCAAGAATTTCCAACAGATTCAAGACGAACTTCTTGCCAGGGCAAATGCAGCAGAAGCAGTCAAAAATCAATCTCTGGAAATCTTTGCCAACAACAAGGATAGCCTGGAGAAGACACTAGAGACACTCAAAGGATTTGATGATCAGATTGGTGTTAAGAAGGATTTGGCAGACGCCGCCATCAGTAAACTTCCAGCGGTCAATGCCACCATCCAGAAGGCCATCGCTGACAACATGCAGACTCAGGACATTCTGGACGCAATGGCTGATCCCTTTAGGGACGCTCAGGAAACCATCGACACTCTCACAAGCAATGTATACAAACTAGAGGGCATGACCAGTTCTCTTCCGTCTTCCTCTGATATTTTGGAAGCTGCCAGTAAGCTGAAAGAGGATGTGGATGGACTGAAGACAGAAGCGTCTGCAACGAGGGACAGACTGAATGAAGAGAAAAGCAAGGCAAAAGCACAGATAAATGAAGCCAAGAACgcTGTCGTGGAGTCCAATGGGGTACTTGAAAACGCAAAGAAAGCCAGGAACGCAGTTAATGATACTCTACAGGACATCGCTGATATTATGAGCTCACTCGGAACTCCTGGTACCATCGATGACAAACGAGTGGCCGACTTGGAGAACGCCATCACTAAAAGCCGCAGACGTGTGGAGGACGAGCTGAGGCCTAAACTTAGGGAACTGGAGGCGAAGGACGCCCAGCAGAGAGCCACCATTACAGGCATGATCAATGACATTGACACCATTCTGGCTGACATCGCCAACCTTGAGGAGATCCATAAAAACATTCCTGAAGGCTGTTTTAACATACCACCTATTGAAAGGCCATAA
>TCONS_00031200
ACGCTGTGGGCAACTGTGACCGGCGAACAGGGCAGTGCCGGAAGTGCCTGAACCACAGCACTGGCCCCAACTGTGAATACTGTGAAGCTGGATACCACCACAACTACCCCACAGAGCCATGCCAGGCTTGTAACTGCAACCGACAGGGTTCTGTGTCCAATTCATGCAGTGATAAAGGCCAGTGCGAGTGTAAGGAAGGATATGATGGACTTAGGTGTGAAGAATCAACATGTCCATCCTGCTTTAATCCAGTTAAGAGCAAGATAGAGGTCTATGCACGCCAGCTGCAGGAAATGGAGGATTTATTTAAGGGATTTGGAGGTAATGAAGCTCCGGTCAGCGATGCTCAGATGGACCAGGCTGTTCGGGCAGCAGAAGTCATGGTCCGAAACCTGGAGAGCAGAGCAAACGAACTCACAAACACGGAGAAACAGCTTCAGGATAAACTGGCGAGCATTAGCCGATCTCAGCTGAGGGAGGATAGAAACATGGAGGCTTTGTTGACAAGCGTGAATGGGATCAGAAACAATGATCAACAGTACAGGACAGAAGTTTCCGAAATCCGTAAACTCATCAGTGACGTCAGGTCAAAGCTGCAGCAGGCCAAACGGGACATGCAGGAGATTGAGATTCCCTCAGGTGATGCTGTGCCAGGCTCTGGCACCTTGTCTGATCTGGTTCAGAGAGCTGCTGATCTTGCTGAGCAGCACCAGGGTGAAGCATTGACGGTGGAGGGCATTGCAGACAATTCTCTGG
>TCONS_00031201
AGCGGAGAGGCTCAGAATGCTCTTCAACAGTTATCTGACCTGGAGAAGAAACTTCCAAAGCCTCTCACGAAGGAGATTGCTGGTGTGGTTTCCATGTTCGATAATCTGAAGGGTCTGGTGGAGGGAAACCTATCGCAGTACAGTGACCTACAGCAGTATATGCTCAATGAGCAGAAAGAGACAGGGGATCTGTTAATCAAGGCCAAGAATTTCCAACAGATTCAAGACGAACTTCTTGCCAGGGCAAATGCAGCAGAAGCAGTCAAAAATCAATCTCTGGAAATCTTTGCCAACAACAAGGATAGCCTGGAGAAGACACTAGAGACACTCAAAGGATTTGATGATCAGATTGGTGTTAAGAAGGATTTGGCAGACGCCGCCATCAGTAAACTTCCAGCGGTCAATGCCACCATCCAGAAGGCCATCGCTGACAACATGCAGACTCAGGACATTCTGGACGCAATGGCTGATCCCTTTAGGGACGCTCAGGAAACCATCGACACTCTCACAAGCAATGTATACAAACTAGAGGGCATGACCAGTTCTCTTCCGTCTTCCTCTGATATTTTGGAAGCTGCCAGTAAGCTGAAAGAGGATGTGGATGGACTGAAGACAGAAGCGTCTGCAACGAGGGACAGACTGAATGAAGAGAAAAGCAAGGCAAAAGCACAGATAAATGAAGCCAAGAACgcTGTCGTGGAGTCCAATGGGGTACTTGAAAACGCAAAGAAAGCCAGGAACGCAGTTAATGATACTCTACAGGACATCGCTGATATTATGAGCTCACTCGGAACTCCTGGTACCATCGATGACAAACGAGTGGCCGACTTGGAGAACGCCATCACTAAAAGCCGCAGACGTGTGGAGGACGAGCTGAGGCCTAAACTTAGGGAACTGGAGGCGAAGGACGCCCAGCAGAGAGCCACCATTACAGGCATGATCAATGACATTGACACCATTCTGGCTGACATCGCCAACCTTGAGGAGATCCATAAAAACATTCCTGAAGGCTGTTTTAACATACCACCTATTGAAAGGCCATAAAGGGTTAAAGCAGGAAAAATGACAATGTTACATAACCTATGAACTTATCAACACCGCTTTTCATCTAAAGAGTGTTTTTCGGCGCTAACGTGTGAGAGagttttttagtatttattttttgttgaatttttaaaaacaaattattactGTGAAGTTTGAAATGAGATGAATTATATTTCTGTTTTGCATTATTACCCAAGATAATTCCGTTTCAGATTAATAGATCAATACCAGAACCACATctaaaattcatttttatttaccaTTTTCAACGTCTATCaaaaaaagtttacaattgtGAAAGAAATGCACAAACTAACACCCTTCATTATTTTGTgatcctttttgttttattaaattca

Function

symbol description
lamc2 Is expressed in head and pancreatic D cell. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa; junctional epidermolysis bullosa Herlitz type; junctional epidermolysis bullosa non-Herlitz type; and lung small cell carcinoma. Orthologous to human LAMC2 (laminin subunit gamma 2).

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko05200 Pathways in cancer
ko05222 Small cell lung cancer
ko05165 Human papillomavirus infection
ko05146 Amoebiasis
ko05145 Toxoplasmosis

ZFIN:

id description
ZDB-GENE-110222-3 Is expressed in head and pancreatic D cell. Human ortholog(s) of this gene implicated in junctional epidermolysis bullosa; junctional epidermolysis bullosa Herlitz type; junctional epidermolysis bullosa non-Herlitz type; and lung small cell carcinoma. Orthologous to human LAMC2 (laminin subunit gamma 2).

Ensembl:

ensembl_id ENSDARG00000068288

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031199 False 2211 mRNA 0.50 14 36004381 36021246
TCONS_00031200 False 756 mRNA 0.51 6 36007449 36014787
TCONS_00031201 True 1406 mRNA 0.43 7 36015049 36021608

Neighbor

gene id symbol gene type direction distance location
XLOC_015629 lamc2 coding upstream 2396 35991137 ~ 36001985 (+)
XLOC_015628 lamc1 coding upstream 25203 35880600 ~ 35979178 (+)
XLOC_015627 dhx9 coding upstream 130791 35854242 ~ 35873590 (+)
XLOC_015625 rasal2 coding upstream 152720 35732652 ~ 35851661 (+)
XLOC_015626 BX571812.1 coding upstream 172936 35831329 ~ 35831445 (+)
XLOC_015631 smg7 coding downstream 24518 36046126 ~ 36079907 (+)
XLOC_015632 BX681417.25 coding downstream 66161 36087769 ~ 36087779 (+)
XLOC_015633 trdj1 coding downstream 66823 36088431 ~ 36088479 (+)
XLOC_015634 trdj2 coding downstream 67050 36088658 ~ 36088717 (+)
XLOC_015635 trdc coding downstream 68052 36089660 ~ 36090680 (+)
XLOC_015623 NA non-coding upstream 390083 35612555 ~ 35614298 (+)
XLOC_015619 FP236741.1 non-coding upstream 423090 35512002 ~ 35581291 (+)
XLOC_015618 NA non-coding upstream 501448 35482156 ~ 35502933 (+)
XLOC_015616 NA non-coding upstream 788894 35146296 ~ 35215487 (+)
XLOC_015636 BX681417.2 non-coding downstream 71345 36092953 ~ 36094319 (+)
XLOC_015646 BX681417.3 non-coding downstream 77361 36098969 ~ 36099028 (+)
XLOC_015685 BX681417.1 non-coding downstream 95786 36117394 ~ 36117456 (+)
XLOC_015702 NA non-coding downstream 158635 36180243 ~ 36583275 (+)
XLOC_015703 NA non-coding downstream 223314 36244922 ~ 36247469 (+)

Expression


Co-expression Network