XLOC_015751


Basic Information

Item Value
gene id XLOC_015751
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38280982 ~ 38283096 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033617
CTTCACTGGATCTTTGAAAAACATCTTTTCCTGAGGCTTCATCTACAGAAAATGAAAGGAATACTACAGAACTGTATTCATCACTCAAAACGAGTTTAACCACCTAGCCCACATCCAGTGTGGACCAGGAGACCCTCAGGGTGAGCTTTGAAGATTGGGGGTGGGTAAAAATATGGTTCCCAGGGCAGACCAGACACACCAAGGCTCCCTGTGGATCAAGACCTGCTGACTGTGTGAAATGAGCACTTGTTCATCGGTGTGATTTAAACTCACCTGCTCAGATATGTGTAGGTAGTTGCAGCTGGCATGACAAACTCTGCACTGACCTTTAGGAGAACACAGACTTAATTGAACCACGCTACTTTCTCTAATAAAAGTATAAACAGGACATTAATTCACGACTTACTTGAATTCACGCAGTTCTCACAAAATATATGGCCACAAGAGGATACCGCGAACTTTTTCCCCTCCCTCACAAAACAGTTGTTACAGTGAAACCAGTTCATTTCACCACTGTGGAGACCAAACATTAACGTATACATGTGCTTTGTATATTTACCGTGACGTAAAGCTAGCAATTTTCTCATTACTCTGATGAGATTACCTCAAGTTTACAATGACAATTCAGCAGAAGCTAGTGGATTCACGGCCTACCGTCAAGTTAGTGAGAGTCACACTTAATCCAACAGATGGCGCCAAAAAGAAACCGTTAAATGGCAGTTCAACGACGACAAACTCGACGCCATCTAGTGGTCAGTTCCGTGAAGTGTCACAACAGCTGCAGAGAGAACTCTGGGAAGGATCATCCAACAACACCCATctgcaaagagagagaga

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033617 True 837 lncRNA 0.44 3 38280982 38283096

Neighbor

gene id symbol gene type direction distance location
XLOC_015750 homeza coding upstream 5324 38271392 ~ 38275658 (+)
XLOC_015749 dhrs1 coding upstream 11307 38261748 ~ 38269675 (+)
XLOC_015748 C2H14orf119 coding upstream 50974 38225427 ~ 38230008 (+)
XLOC_015747 mmp14b coding upstream 97341 38161318 ~ 38183641 (+)
XLOC_015746 sall2 coding upstream 123643 38147761 ~ 38157339 (+)
XLOC_015752 nedd8l coding downstream 5212 38288308 ~ 38289751 (+)
XLOC_015753 NA coding downstream 87439 38370535 ~ 38371944 (+)
XLOC_015754 psmb5 coding downstream 90176 38373272 ~ 38392575 (+)
XLOC_015755 NA coding downstream 132921 38416017 ~ 38422233 (+)
XLOC_015756 cdh24b coding downstream 271164 38554260 ~ 38709083 (+)
XLOC_015741 NA non-coding upstream 280788 37999779 ~ 38000194 (+)
XLOC_015740 NA non-coding upstream 290477 37974996 ~ 37990505 (+)
XLOC_015738 NA non-coding upstream 309938 37967985 ~ 37971044 (+)
XLOC_015737 LO017954.1 non-coding upstream 353570 37926380 ~ 37927412 (+)
XLOC_015734 AL954692.1 non-coding upstream 434133 37836619 ~ 37846849 (+)
XLOC_015762 AL953896.1 non-coding downstream 753086 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 768791 39051887 ~ 39052229 (+)
XLOC_015764 CU179756.1 non-coding downstream 776539 39059635 ~ 39070308 (+)

Expression


Co-expression Network