XLOC_015740


Basic Information

Item Value
gene id XLOC_015740
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37974996 ~ 37990505 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033285
AGACACGACTACGTCATACTGATACTATGAGGTGGTTCACTGTGCTTGTCATTACTCGACACAGATTTCACCGGGCGGGGCTTTGCAAAGTTTTGACAGTCGATCTCTCTGTGGCTGTACGCATGGAAGCATAAGAAAAGAAATACCACAATGGTGATTCCAGAGGGAACACAGAAGCAGAAGCAGAGTCTCACTACATTAAAATGAGGAGAGAGCAGATTCAATGTCCAGGCGTTCAGACACAGCTGAGCACTCATCCGAGGCGAGACAGTGCATGTTTAAAGATCTGGGAGCAGCAAACATTCAGACAGGGAACAAGTTTGCTGAGAGTGAAGTCTCGTCTCTCAATGATCGACTATCAGACACCATTGACCCTAAGGGGAAAGGAGCTGTTTTTAGAAGATTGTTTAAGAAGACACCTAAAAAGGTGACAAGTCTCGCTGCACAGGAGGTAGAACCACAGGTGGAGTTTTTGGACATTACAAAACCAATTTAAGCCAAAATGTTTTGATGACAGACAACTAAATCT
>TCONS_00031341
GGTGGTTCACTGTGCTTGTCATTACTCGACACAGATTTCACCGGGCGGGGCTTTGCAAAGTTTTGACAGTCGATCTCTCTGTGGCTGTACGCATGGAAGCATAAGAAAAGAAATACCACAATGGTGATTCCAGAGGGAACACAGAAGCAGAAGCAGAGTCTCACTACATTAAAATGAGGTGAAGTTAACATAAAGTGCCATTGATTCAGAAGAAAACAGCAGATATAATTTAGGAGAGAGCAGATTCAATGTCCAGGCGTTCAGACACAGCTGAGCACTCATCCGAGGCGAGACAGTGCATGTTTAAAGATCTGGGAGCAGCAAACATTCAGACAGGGAACAAGTTTGCTGAGAGTGAAGTCTCGTCTCTCAATGATCGACTATCAGACACCATTGACCCTAAGGGGAAAGGAGCTGTTTTTAGAAGATTGTTTAAGAAGACACCTAAAAAGGTGACAAGTCTCGCTGCACAGGAGGTAGAACCACAGGAAAAACTGTCATTACAAGATGGAGAACTGTCAGCAAGCAAACACCATCAAACAGAAACCCACACCAAGaaagaaCCAGTATTTAAGAATGAGGATTTTCCAGCCAGTGACAGTCATGAGGAGAATTCACTGTTTAATTTTCTCAAAACATTTCCAAGAGGAACTGAGGACACTTCTGGAGAGGACAGCCCACCATTACACATCAAACTGCTGGCCAGTAATGACCATCTCTTACATCCCCTGTATAACAACGTAGAGGATAATTCAGGCAAGCTAAATGGCACTTTCCGCAGTTCCCCAAAACCAGCATTACGTTTTGCTGTGGAAACGGATCCACTAAGTGAGCACAGTGAGCTTACAGACTGGGATTATACCATTTTGGAAGCTGATAAGAAATCTATTGAAGTGCCCAGAAAATGCACAGCAAGTCATCAGAAAATCTCTAATCGTAGTACTAAGGTGTCATATAGAGTGAAGAGAACTCTGTCTACAATGTCCACATTTTCATCCGGTACACAGGGCTCTGACCAGGAAGATATAATGAATGAACCAGTGGAACTACAGCAACTGCAAAATACTGAGGACTGTACTTTTGAAATCCTGCCAGTGGAGATGGCTGCCTATCCAACAGATTTAAATTCCTCAGAGACAGATGAGGATAATGGTCTGATGGACTGGTGGAAAACTGTTGAGGGTTGGAGTGAATGGAACCAAACATCAAATTTTCAGGAGGATGACGAGGAGCTGGCTGTAGAGGCTGCTGCTGACCGTGTGTTCATGGCCGCCCGTCTCTTTGTCAGTCTATTCAACCAGCGTGGAGCATCTTTGCAATGTCGCATTATGGAGTTGCTTGCTCTGGCTGATGCTGCAGACAGTTTCCATAAGAAGACGGTGAGCGCCGCTATCGGAGGGGGTGTAGCTAGCGTCGCTGGAGGCATAGCCACCATTACTGGCCTCATCCTTGCACCCTTCACCTTTGGCACATCCACTATTGTCACTGCAGTGGGCATCAGTGTGGCCACAGCTGGCAGCATCACTTCAGCCACAGCGAACATCACCGACGCTGTTCAATCCAAGATAGACCGCAAGAAAGTGGAGAAGATGATCCAGGGCTACCAGAGTGAGATCACTGACATTAGGGATTGTCTGGAATTCATGCAAGAAGGAATGAATACCCTGCAGGAATGGGATTTTAAGGACTACTCTGACAGTGTGGTCAACACAAGTCTCAACCGTAATATAAAGTATGTGATGAAGGAAGGTGGGCGAGCTGGAAAAGCCCTCCTGATAAACACTGATAGACTTGTTAGCACTGTGAAAGTTTTGGGTGTTGCTGGAGGTGCTGCCAAAGCCGCCAAGGCCATCAGTATCACCACAGGGGTCATGTCCACTCTTTTCCTTGCTCTGGATGTCTTTTTTCTCGCCAAAGACTCAAATGAACTCCGCAAAGGTGCCAAGACCAAGTTTGCCTCCAAGATCCGAGAAGTTTGCAAAGAGCTTCAACATGGCCTACTGGAATTAAACAAAGTGAAGACGCAGCTTCAGAAGACCATGGATGGAATTGAAGTGGAAGAATATGAGGAAGATGAGGAGGATGAAGACCCGTGTGTGTCAGATCCCATCAAACTGGCTCTGCTTGAGCAGGAACTTGACCAGATTGAGGAGAAACTTGACCAGAAGGGTCTGCAGGATCAAATGAACAAAAGCAAGAAGGCAGAGACTGAagaaaagacaacaaaaaaaacaataatgaggAGTGAAAATGAATGATGCAACGTATCACTAAAGAAATGACAACAGCAGGATGGTTGGCAAATAAAAGATTTGAAAGTGGGAA
>TCONS_00033286
GAAAAGAAATACCACAATGGTGATTCCAGAGGGAACACAGAAGCAGAAGCAGAGTCTCACTACATTAAAATGAGGTGAAGTTAACATAAAGTGCCATTGATTCAGAAGAAAACAGCAGATATAATTTAGGTAAGCCATGTGTCACTGTCATGCAGTTAAACGCTCAAATACATTTTAGCAGTCACATATATGAACTGTCAATTTGTGTTGTTTCCTCTGCTTGTGCCAAAAGGAGAGAGCAGATTCAATGTCCAGGCGTTCAGACACAGCTGAGCACTCATCCGAGGCGAGACAGTGCATGTTTAAAGATCTGGGAGCAGCAAACATTCAGACAGGGAACAAGTTTGCTGAGAGTGAAGTCTCGTCTCTCAATGATCGACTATCAGACACCATTGACCCTAAGGGGAAAGGAGCTGTTTTTAGAAGATTGTTTAAGAAGACACCTAAAAAGGTGACAAGTCTCGCTGCACAGGAGGTAGAACCACAGGAAAAACTGTCATTACAAGATGGAGAACTGTCAGCAAGCAAACACCATCAAACAGAAACCCACACCAAGaaagaaCCAGTATTTAAGAATGAGGATTTTCCAGCCAGTGACAGTCATGAGGAGAATTCACTGTTTAATTTTCTCAAAACATTTCCAAGAGGAACTGAGGACACTTCTGGAGAGGACAGCCCACCATTACACATCAAACTGCTGGCCAGTAATGACCATCTCTTACATCCCCTGTATAACAACGTAGAGGATAATTCAGGCAAGCTAAATGGCACTTTCCGCAGTTCCCCAAAACCAGCATTACGTTTTGCTGTGGAAACGGATCCACTAAGTGAGCACAGTGAGCTTACAGACTGGGATTATACCATTTTGGAAGCTGATAAGAAATCTATTGAAGTGCCCAGAAAATGCACAGCAAGTCATCAGAAAATCTCTAATCGTAGTACTAAGGTGAgcatcttttgtttgtttaaaatacaaGAGCATTTGTATCTTTGGAGgtctaaaatgtt

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0048666 neuron development biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040724-111 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis and schizophrenia. Orthologous to several human genes including APOL1 (apolipoprotein L1); APOL2 (apolipoprotein L2); and APOL3 (apolipoprotein L3).

Ensembl:

ensembl_id ENSDARG00000023185

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033285 False 529 lncRNA 0.44 5 37974996 37978500
TCONS_00031341 False 2325 mRNA 0.45 20 37975026 37990505
TCONS_00033286 True 1008 lncRNA 0.41 11 37975579 37981058

Neighbor

gene id symbol gene type direction distance location
XLOC_015739 apol1 coding upstream 271 37971353 ~ 37974725 (+)
XLOC_015738 NA coding upstream 3952 37967985 ~ 37971044 (+)
XLOC_015737 LO017954.1 coding upstream 47584 37926380 ~ 37927412 (+)
XLOC_015736 tep1 coding upstream 68878 37897079 ~ 37906118 (+)
XLOC_015735 cbln13 coding upstream 96692 37874771 ~ 37878304 (+)
XLOC_015741 NA coding downstream 9274 37999779 ~ 38000194 (+)
XLOC_015742 dcaf8 coding downstream 12212 38002717 ~ 38020603 (+)
XLOC_015743 hnrnpc coding downstream 34755 38025260 ~ 38034190 (+)
XLOC_015744 casq1a coding downstream 49352 38039857 ~ 38054482 (+)
XLOC_015745 si:rp71-1g18.1 coding downstream 65024 38055529 ~ 38066173 (+)
XLOC_015734 AL954692.1 non-coding upstream 128147 37836619 ~ 37846849 (+)
XLOC_015733 NA non-coding upstream 147957 37826734 ~ 37827039 (+)
XLOC_015725 NA non-coding upstream 667425 37301408 ~ 37307571 (+)
XLOC_015751 NA non-coding downstream 290477 38280982 ~ 38283096 (+)
XLOC_015753 NA non-coding downstream 380030 38370535 ~ 38371944 (+)
XLOC_015755 NA non-coding downstream 425512 38416017 ~ 38422233 (+)
XLOC_015762 AL953896.1 non-coding downstream 1045677 39036182 ~ 39046184 (+)

Expression


Co-expression Network