XLOC_015736 (tep1)


Basic Information

Item Value
gene id XLOC_015736
gene name tep1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 37897079 ~ 37906118 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031338
GCTCACCGGTTTACTTCATTGTACACTAATAATACATGGTCGCAAAGCGTTAAAGCTAAGCAGTCATGAAGGCTCCGGCTCTCCTTCAGTCCGATCTGAAGGTAAATACGGACATCAGACTACAGCAAATTTGCCACAGTCCCCGGCTGGAAAACCGCATTTTGGCTCAAGCAGCCTCAGCATTGTCTCACCATCAGTATGCAGCTCCATCCTGGGCCAGTCAGACCCACATCTCCTCAGCATGTCCAGCTCTCCAGCCAACCAGCCTGTCCTTAACCAGGTCTTCCTCGTCCCTTCTGTCCTCCACAACGATGAGCTCTATCTCCTCTGATTCGTCCCTGCTGAGCACCAAAAACACCCTTCTGATAGAGCCCCGACTCCACCTTCCAGCCTCATCCTCTCTCACCTCCACCTGCTCCCAGAATCCTCTACTTTATTGCTCTAAAATGTCCACAGCCAGCATCATCCCAAATATCTGCTCCTATCCGTCAACTTCAGCAGAGGATAAAGTGAGCTCACATGAAAAGAGAGAAGAGGAAGGCATACTTTTATCAACCGAAGGCCTGCTGGGAAATAGAGAGGAGCCCAAACAGGATGCCCTCAGGATGTCTTCACAGGAAAGCTTGGATGGGGATGACCAGATGCTGTCGTCTGAAGCGGCTGTTTTGGATATGGATGTAGATGGAGTGGGGGAGCAGACTGTGGCCCTTCGTGAGGAGTTTGGAGATCTTGAAGTAAGCAAAGAGGAGAAACTTGCTGAACTGAAGGACCGGAAGAACAACCTGTTGAATATGGTGTGCTGCTCGCTGATTCAGAAGGGCTGTGCCCCAGGCCAGAAGGACTGGGATAACAAGAAGAGTGTGTGGAGCATTATCAAGAAACTAGCTACCGAGATTACCACAGAAGATCCTGAGTTTGTCCTCAAGGTTGCAGTCTACACTAGGCAGGAACTGAACATTCGTATCACAGCCAACTACCTGCTGGCGTTGGCTGCTCATCTGCCTGCGTCTAAACAACACCTGAGAAGATACTTTTGTCCTGCTGTGCagctgccatctgattggctggaagtGGCACGTCTCTATAGCATGTGTTTCAGTAAATCTTTACCCTCTTGCCTGAAAAAAGCTCTTGTGGATAAATTTAAGCAGTTCAGCGAATATCAGCTGGCTAAATACAATACACGAAAGCATCGCTgcaaacacaacaaaaaccaaaAGAAAGGAAAGAATATCTCGCCCGAGGAGTGGAAGAAGTGGGGTGAGCTGCTCAGAGTCGACGAGCCCATTCTAAGAAAATATAAGCAcactaaaaaagataaaaaagagAGTGAATTCAGCCTCAAGAAGATGGTAATGCGCCTTCACATCAAGGAATCTGCAGAACATGTCATGGCCATTCTGGGAAAGAAaTACCCGAGTGATCTGAAGGCGTTCTCTCGCAGTGGTCTTAGTGGGGTCTGGGACAGAGAGAGAGCCGGAAAGCAGATGAAACTTAAGCAACCTGACACATGGGAGCGCAAAGTTAGTCAGGAGGGAAACAAAGCTGCCACCTGGGAGAAACTCATCGATGGGAAGTCTCTTCCTTTTATGGCCATGCTCAGGAACCTGAGGAACATGATCACTGTGGGCATCAGCGAGAAACATCACTCTAAGATTCTTAACAGACTGTCCTCGAAGAATGCTGTAATCCAGAGCAGGCAGTTTCCCTTCCGCTTCCTGTCTGCTTATAAAGTCATTTTGGAGCT

Function

symbol description
tep1 Predicted to enable RNA binding activity. Orthologous to human TEP1 (telomerase associated protein 1).

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-030131-6153 Predicted to enable RNA binding activity. Orthologous to human TEP1 (telomerase associated protein 1).

Ensembl:

ensembl_id ENSDARG00000038713

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031338 True 1747 mRNA 0.48 11 37897079 37906118

Neighbor

gene id symbol gene type direction distance location
XLOC_015735 cbln13 coding upstream 18775 37874771 ~ 37878304 (+)
XLOC_015734 AL954692.1 coding upstream 50230 37836619 ~ 37846849 (+)
XLOC_015733 NA coding upstream 70040 37826734 ~ 37827039 (+)
XLOC_015732 sdr39u1 coding upstream 72652 37815687 ~ 37824427 (+)
XLOC_015731 ltb4r2b coding upstream 84894 37804235 ~ 37812185 (+)
XLOC_015737 LO017954.1 coding downstream 20262 37926380 ~ 37927412 (+)
XLOC_015738 NA coding downstream 61867 37967985 ~ 37971044 (+)
XLOC_015739 apol1 coding downstream 65235 37971353 ~ 37974725 (+)
XLOC_015740 NA coding downstream 68878 37974996 ~ 37990505 (+)
XLOC_015741 NA coding downstream 93661 37999779 ~ 38000194 (+)
XLOC_015725 NA non-coding upstream 589508 37301408 ~ 37307571 (+)
XLOC_015713 dre-mir-2198 non-coding upstream 1143321 36753649 ~ 36753758 (+)
XLOC_015712 NA non-coding upstream 1153167 36742343 ~ 36743912 (+)
XLOC_015751 NA non-coding downstream 374864 38280982 ~ 38283096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15787382_15803133 NA coding CI01000004 null 15787382 ~ 15803144 (+)