XLOC_015744 (casq1a)


Basic Information

Item Value
gene id XLOC_015744
gene name casq1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38039857 ~ 38054482 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031344
GTCTCTTTTAGCCGTGTGTTGGGGTTTCAAACAGGGGGCCTCAGGACTTGGTCTTGTCTGTTCTGGGTGGCGGGGATCACAGGTCCTTTCGAATccaattttatgttttaaattcagtGGAACTACACATTTCCCTACTTTAAGTATTGAATCATGAAGTGGAACCTTGTGTTCCTTGGGCTCCTCCTGACCTTCGGGCAGCTGTCATGGGGCCAGAAGGGTATGGACATCCCGGAGTACGATGGAAAGGACCGCGTTCACGAACTTAACGCCAAGAATTACAAGTCTGTGATGAAGAAATATGACGTGATGGTGGTGTACTACCATGAGCACGTAGGATCCAGCAAAGTCGCCCAGAAACAGTTTCAGATTGAAGAGCTGGCCCTTGAGCTTGCTGCACAAGTCCTGGCAGACTTTGACGATGAGGATATTGGAATTGGCCTACTCGATGAGAAGACGGACAAAGCTGTTGCCAAAAAGCTAGGTCTGGATGAAGCTGACAGTATCTTCATCTTCATTGAGGATGAGGTCATCGAGTACGATGGAGAGCTTGCTGCGGACACACTGGTGGAGTTCATCTACGATGTCATTGAGGATCCAGTTGAGATCATTGGCAACGTACGTGAAATGAAAGGTTTCAATAATATTGAAGAGGATATCAAGCTGGTGGGCTTCTTCAAGAGTGCGAAATCTGACCACTACCATGAATATGAAGACGCAGCAGAGGAGTTTCACCCACACATTAAGTTCTTTGCCACTTTTAATCCAAAGGTTGCTCTGAAACTAGGCTTGAAGTTGAATGAGGTGGACTTTTATGAGCCCTTCATGGATAAACCCGTCGTCATCCCTGGGAAACCCTACAGTGAGAAAGAACTTGTCAGATTCATTGAGGACAATGACAGGCCAACACTGAGGAAAATGCAACCCCACAACATGTATGAGATCTGGGAGGATGCTCTTGACGGCGAACATATAATTGCATTTGCTGAGGAGGGTGATCCAGATGGCTTTGAATTCCTTGAAATTGTGAAGGAGGTAGCAGAGGATAACACAGAGAATCCTGACCTGAGCATCATCTGGATTGATCCCGATGACTTCCCTCTGCTTGTCCACTATTGGGAGAAGACCTTCGACATTGACCTGTCCTCACCTCAGATTGGCGTTGTGGAAGTGGATGATGCTGAGAGTATCTGGTTTGATATGGACGATGATGACATGCCAACAGTTGATGAGCTGGAAGACTGGCTGGAGGACGTGCTGGAgaataaaattgatccggatgacgacgatgatgacgatgatgatgatgacgacgacgacgatgatgacgacgacgatgatgatgatgacgacgacgatgatgatgacgacgacgatgatgatgatgacgatgatgatgacgacgatgatgatgacgatgatgatgacgacgatgatgatgatgatgatgacgacgatgatgatgacgacgatgatgatgatgacgacgatgatgacgacgacgatgatgacgatgatgatgacgacgatgatgatgacgacgacgatgatgatgatgatgatgacgatgatgatgacgatgatgatgatgacgacgatgatgatgacgacgatgatgatgatgatgatgatgacgacgatgatgatgatgacgacgacgatgatgacgacgacgatgatgatgacgacgacgatgatgatgatgacgacaatgatgacgacgacgatgatgatgatgacgacgatgatgacgacgacgatgatgatgatgacgacgatgatgatgacgacgatgatgatgacgatgatgattaAACTTATTCCATCTCACTTGCCATCTATTGTCCAAACTAAAGTCTGTCATCTGTCTAAATCATCAACGTCATAAAAATTCCTTTACTATTTCTTGTCGGAAATCACAAGGTTAAACGTCATCATGTAACTGTCACCTTGTACCATGCATATCTAATAATGCACTCATTATTGTCTCTCCCATTGACCCAATGTTCTATTCAAAGACCACGCTCTCTCTTAGACCTTCAGATATTCATATGTTGACATCACACACTACAATCATTAGCAATAGACGTGTATTGCTTTTAGTTTCTTACCATCCAGTTTCTTTCATTCATAAGAATATAGGCCTACTGTAATTGgaaatacaacaaaaatattcTGGCAAAGGACCTGACTTTCAAGCAAAAATACTACCCAAAAACATGTAGGATCCTCAGAGGGAGCAGCGACATTATTTTAAGTGTACATCCATCTGTTAAAGTTGTTGTTATTGTCtcgctgtttgtttgtttgttccaaTATGTGGATTGAGTGTTTGTCCCACTGTGATAGGACCTAAAGGTGCTAAGCAGGCTTTTCCTCAAGGTCATTCGTCATACCTTCTTTCTTTGTTAAGATAGGATGTGACCTTATGTGACGTTAGACAGAGAAGGGATTGTCCAGCCTTCCTTCGGTGTCTAAAATGTGCAGTAAATTGTTTTCTACTGAAAAAGAaacattgatattttattttttttaacgaagACAACTCTTACTCTTaagtcttaaaataaaaaaacagattggAATAAAATGGTGTAAATCATAgtttttatatgaatttaaataCGCCAGATCTGGTGCTAGATGGTCTGCTTTAGACATATTTCAATGTGGGATGGCAGTTTTCAGCACTAGCTCTGCATTTCTCTGTTCATGTGAGGATACagatgttcatgttgctaatgattttttttctttaggttTTCCTTTGGTCACAAGGGCCTAATGTTTCACATAATTGCAAATGTAATGATGTGTtgagtgtgttaatgtgtttattcattcTGAAGCAGTATCATATCTCTGTTTATTATTCTGTTTAATTGCATTCCCAAACAAATTGTGGCACTTTCCACGAATAGGGTACAATTTCTATAGTAAGTTTAATAAAAGTAAcgtttaataaatttataaattata

Function

symbol description
casq1a Enables calcium ion binding activity. Predicted to be involved in regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion. Located in Z disc. Is expressed in myotome; skeletal muscle; and somite. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CASQ1 (calsequestrin 1).

GO:

id name namespace
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0051279 regulation of release of sequestered calcium ion into cytosol biological_process
GO:0033018 sarcoplasmic reticulum lumen cellular_component
GO:0030018 Z disc cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-139 Enables calcium ion binding activity. Predicted to be involved in regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion. Located in Z disc. Is expressed in myotome; skeletal muscle; and somite. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CASQ1 (calsequestrin 1).

Ensembl:

ensembl_id ENSDARG00000038716

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031344 True 2979 mRNA 0.42 11 38039857 38054482

Neighbor

gene id symbol gene type direction distance location
XLOC_015743 hnrnpc coding upstream 5667 38025260 ~ 38034190 (+)
XLOC_015742 dcaf8 coding upstream 19254 38002717 ~ 38020603 (+)
XLOC_015741 NA coding upstream 39663 37999779 ~ 38000194 (+)
XLOC_015740 NA coding upstream 49352 37974996 ~ 37990505 (+)
XLOC_015739 apol1 coding upstream 65132 37971353 ~ 37974725 (+)
XLOC_015745 si:rp71-1g18.1 coding downstream 1047 38055529 ~ 38066173 (+)
XLOC_015746 sall2 coding downstream 93279 38147761 ~ 38157339 (+)
XLOC_015747 mmp14b coding downstream 106836 38161318 ~ 38183641 (+)
XLOC_015748 C2H14orf119 coding downstream 170945 38225427 ~ 38230008 (+)
XLOC_015749 dhrs1 coding downstream 207266 38261748 ~ 38269675 (+)
XLOC_015738 NA non-coding upstream 68813 37967985 ~ 37971044 (+)
XLOC_015737 LO017954.1 non-coding upstream 112445 37926380 ~ 37927412 (+)
XLOC_015734 AL954692.1 non-coding upstream 193008 37836619 ~ 37846849 (+)
XLOC_015751 NA non-coding downstream 226500 38280982 ~ 38283096 (+)
XLOC_015753 NA non-coding downstream 316053 38370535 ~ 38371944 (+)
XLOC_015755 NA non-coding downstream 361535 38416017 ~ 38422233 (+)
XLOC_015762 AL953896.1 non-coding downstream 981700 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 997405 39051887 ~ 39052229 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G34583 NA non-coding CI01000004 null 15930375 ~ 15944664 (-)
mexican tetra (Astyanax mexicanus) G29270 NA non-coding NC_035899.1 CM008302.1 58848687 ~ 58851351 (-)