XLOC_015745 (si:rp71-1g18.1)


Basic Information

Item Value
gene id XLOC_015745
gene name si:rp71-1g18.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38055529 ~ 38066173 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031345
GTCAGCAGACACGCCCATTACTTCCATCTTAGCCATGTGGCTATGACCACAAACGACTGCGCGTCCGATCCGTTTGTTTATGCCGTCTAaccaatattgtgcatgttcagaCCGCGAGCAAAATGTCCGAGTCCGTGTCCCGGTTTCAGGCAGAGGTGGCGGCCGTTCTGGAGGTGCTGCTGAAGGTGGCCGTGGTGGAGATAACGAAAGTTTTCGAAGGACGCTCTGTGGATTCCCATGGCTGCACGGTCGACGGAGGAGCTCGGGGAAAAGAGGAGCTGGATTGCGTCCCTGACATCAGGGCTCATATGAAAAGTGCATTGAATAACCTCTCGGAGAAGATGGTTTGCAGCGTCGGCGTGCAAGTAGGAGAAACGCTGCTGACCCGTCCACAGGATGAGTGTGTGTCCACTGAGAGGATCAGCTGCAATCTGCAGGAATCCAAAAGAGAGGAGGGGCTTTCCCCATCTGAAAGTCTCTGCAAGGAGCCTCCAGAAGCAGTGGATTTACAATGCATGGTTGACCTTCCATGCACAATCCTCAAAGAAACCGGGATTGGTGTAGGGAGAGGAAACCTAATTCCTGACGCACCGTGGACAGATGATCTAAAGAAAACAGAGACCATTCAGGAAAATGGTCTTCGAGGACTTTCTCTTGAGGAACCGTCTGCACACTCTATAGTGGATCCAGACTCTCATCTGTTCAGCTCTGTTTTAGACAGCATTCCCATTGCTGACCTTTCCACTGACACTTTGAGCCAATGGGACCTTAGCCTTGTGGATGTCAATCCTTTGCCCTCACTTGAAAAACCTGAAGCTCCTCATACCAGCGAAATGTCATTGGAGGACACTGAGCTCAGCCAGGCCTCGGCCAGCAGTGCCGCGAGTGGAAAGAAGGTGCGTTTCCAGCTCACCCAAACACCTTTCGACTGCAAACTTTTAAGGCCCTGTTCTGTGCAGCTTGTGAACCTTCTGATGGTGTCCAGCGCGCACAAGGCAAACGGTTCCAGCAAAAAATGCTTCTCCGCACCCAAAGATCTACGTACGCATCAGCGGGTCCATACGGGACGCAGACTATGCTGCTTTAAAGAGTGCGGAAATGGCATTTGGCGCCTGCAGGGCGTCCTCGCTCACGGGCATCCTCACGCCTGCAAGATCTGCGGCAAGAAGTTCAAACGCAAAAAGATGCTCAAGCGGCACGAGCGGTTCCACACAGGAGAAAAGCCGTATTCGTGCAGGAGGTGTAAAAAGACGTTTGCCCTGCGGAAGAGTCTACGAAGGCACGAACGTTTCCACACGGGAGAAAGGCCCCACACTTGCCCCCACTGCAGGAAAGCTTTCCGCCTCAAGAACAATCTGAAGGCTCATCTGCGCTTCCACACCGGTGAAAAGCCCTACATTTGCAACCTCTGCTCCAAGGGTTTCAGGATCCGCAAGAATCTGGAGAAGCACAGACTCCTTCACTTAGCGCCGGTTAACTTTCGAACTCTTCAATAGCAGAAGGGTCACGTGATCACATTTCTACCTCGCATCAGAACCACTGGATCCCAAACAGCACAGAGTTTAAAGCACTGGCGATTAGGTGACTTATTTAGTGTGTTTCCACTTTTTGTCTTCAGGAGTGTTTGTGGAGAGTTGCTCCTCACACCGTCTATGCTAGTTGTGAGTTGTTCATGTCTTTTGAAGAATTGTTTCATGTCACTAAGCATTAAGTGTCCAGGGCATTAAAGAGCCCATCCTGCAGTTCACCGCAAAcagacttgactgatttctgctCGATGTAAATATTCTGTAATAATCGTAGCTCTAGAATGCTTTTTAAACTTTACAACTTTTATAATCTGGACCTTTTAACATGTCTGTCTGGCTTCTTGCAACATGGTTTACATGTTGTTGAACACTGGAGATGGTTGAGATTTGGCTTTGTATGTCTTTTGTATGTACTTTGAAGAGATTCTTAAATTGGACTTTTTTAGCACGCtttcatttctcaaaacaaaaagagaaaagtgCTTTTCGTAACTCTTTTCAAACATTATATACTCATTATTATAGCTTTTACATGCGTTTTCTAACTGTTGTTTCTGTGTTTGGACCAAGCAGCTTTTTTTAATCTCAAGTTTTCAAAGATTATTTGTTCTATCCTTTGTGTTTCTTATAATCCATCTATGCTTTCTTGATTACATGCTTTAGTTTGATATAAAGAAAAACCTTAGTGACAGATTTGTGGATTTATAGCATGTGAGTTtataaagaagaaaaaagcatttattatatACATCCTGTTTTGCCATTCCACATAGCCATTATGAaaagacaagtttttttttttttctttctaataaACGAATAACCATATGGTTCATAAAGT

Function

symbol description
si:rp71-1g18.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5470 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000053792

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031345 True 2370 mRNA 0.46 4 38055529 38066173

Neighbor

gene id symbol gene type direction distance location
XLOC_015744 casq1a coding upstream 1047 38039857 ~ 38054482 (+)
XLOC_015743 hnrnpc coding upstream 21339 38025260 ~ 38034190 (+)
XLOC_015742 dcaf8 coding upstream 34926 38002717 ~ 38020603 (+)
XLOC_015741 NA coding upstream 55335 37999779 ~ 38000194 (+)
XLOC_015740 NA coding upstream 65024 37974996 ~ 37990505 (+)
XLOC_015746 sall2 coding downstream 81588 38147761 ~ 38157339 (+)
XLOC_015747 mmp14b coding downstream 95145 38161318 ~ 38183641 (+)
XLOC_015748 C2H14orf119 coding downstream 159254 38225427 ~ 38230008 (+)
XLOC_015749 dhrs1 coding downstream 195575 38261748 ~ 38269675 (+)
XLOC_015750 homeza coding downstream 205219 38271392 ~ 38275658 (+)
XLOC_015738 NA non-coding upstream 84485 37967985 ~ 37971044 (+)
XLOC_015737 LO017954.1 non-coding upstream 128117 37926380 ~ 37927412 (+)
XLOC_015734 AL954692.1 non-coding upstream 208680 37836619 ~ 37846849 (+)
XLOC_015751 NA non-coding downstream 214809 38280982 ~ 38283096 (+)
XLOC_015753 NA non-coding downstream 304362 38370535 ~ 38371944 (+)
XLOC_015755 NA non-coding downstream 349844 38416017 ~ 38422233 (+)
XLOC_015762 AL953896.1 non-coding downstream 970009 39036182 ~ 39046184 (+)
XLOC_015763 NA non-coding downstream 985714 39051887 ~ 39052229 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_15947153_15953245 NA coding CI01000004 null 15947153 ~ 15953870 (+)