XLOC_000159 (stra6l)


Basic Information

Item Value
gene id XLOC_000159
gene name stra6l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 12172322 ~ 12193239 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000280
ATATTGGAGCTCACGTCTGTGATGAAGCACATCAATAATAGGGCCTAACAGGTGTTTATGTTCACTGAACGGGACTCATCGGATACCTCAGAAATCATGGTGGAGTGTCAGAATGGGATTTCGGTGGATTTGTTCCTTCGTTGCTCTCTAGTTCCTTCTGTCTTCATTATGTTTCTGCTCTCATTAGTGCAGCGGCGAGCCAGGGCTCAGCCTTTTGAGGACCGCTTTCCATATCTCAAGGGCCGATTCGGCATTGTGGTGTGAGTTCTCTTTAAACAAAATCTGTAGTTGTACATTTTATATCCATCTATgctttcaattgtttttttttttgtgttactttGCAGGCCACTAGATTTCATTGGCAGTCTAAGTAACCGATGGTCTTACGGTTTCGCATTTGGTGCCATTGCTCCCAGCGTGATTCAGCTCTTCTCTGAGTCCTACGCACCATTTTATGTGCCTAACTGGGCTAAAGCCATTGTGTACCTGATAGGAGCGATAGAAGTTGGTGTGGCCTACCTGCCGTTCTTCGCTTGTCTTTCAACACCACACCGAGTGCTCGGAGGGATTTTAGGTCTTCTCTACACGCTCATGTGGCTCAT
>TCONS_00000281
ctggcaaattaaaagtcctattcgcatgcttcagcatataccctaaaatcccagaatgtctttcgaaaaagagtaacgttaacgttacggGTTTATCCCCGGCATCCTGGCTAATtttacccactggcctctgtccattgtaattggcttcattactctgtctTCTCTatctgtggtgtgcggtctggtggaaaatggctgctgtcgctttatccaggtggatgctacactggTGGTCTTCATTATGTTTCTGCTCTCATTAGTGCAGCGGCGAGCCAGGGCTCAGCCTTTTGAGGACCGCTTTCCATATCTCAAGGGCCGATTCGGCATTGTGGTGCCACTAGATTTCATTGGCAGTCTAAGTAACCGATGGTCTTACGGTTTCGCATTTGGTGCCATTGCTCCCAGCGTGATTCAGCTCTTCTCTGAGTCCTACGCACCATTTTATGTGCCTAACTGGGCTAAAGCCATTGTGTACCTGATAGGAGCGATAGAAGTTGGTGTGGCCTACCTGCCGTTCTTCGCTTGTCTTTCAACACCACACCGAGTGCTCGGAGGGATTTTAGGTCTTCTCTACACGCTCATGTGGCTCATTGTGAGACTGTATGACACGATAACCTGCCCTGCGGGAAAGATTTTAGGTCCTTATGAGAAACCGATCATCCTGTGGCCGTTCTACCTGTGTCTGTTTTTCCTGCTTGGACGGTTCGTTTACATCATTGTGAAGGCGGTACGCATCCATCTGAAGCTACAAGCTGATGAGAATGAAGAGGATCTACACTCCCATCAGTTCAGATACGTGCAAACTTTACTGAGACGTCCTCCTGAAAGCCCAGAACCGAAGAGTTGGTTCAGAAGAAAAGTGTATGACTGGGATCCATACTTTAAGTTCCCTAACAGGATGATTGGCACATCCATTATCTCCTTTATTGGCTTGTACATGaTGA
>TCONS_00000282
agtaacgttaacgttacggGTTTATCCCCGGCATCCTGGCTAATtttacccactggcctctgtccattgtaattggcttcattactctgtctTCTCTatctgtggtgtgcggtctggtggaaaatggctgctgtcgctttatccaggtggatgctacactggTGGTAGGTCTTCATTATGTTTCTGCTCTCATTAGTGCAGCGGCGAGCCAGGGCTCAGCCTTTTGAGGACCGCTTTCCATATCTCAAGGGCCGATTCGGCATTGTGGTGCCACTAGATTTCATTGGCAGTCTAAGTAACCGATGGTCTTACGGTTTCGCATTTGGTGCCATTGCTCCCAGCGTGATTCAGCTCTTCTCTGAGTCCTACGCACCATTTTATGTGCCTAACTGGGCTAAAGCCATTGTGTACCTGATAGGAGCGATAGAAGTTGGTGTGGCCTACCTGCCGTTCTTCGCTTGTCTTTCAACACCACACCGAGTGCTCGGAGGGATTTTAGGTCTTCTCTACACGCTCATGTGGCTCATTGTGAGACTGTATGACACGATAACCTGCCCTGCGGGAAAGATTTTAGGTCCTTATGAGAAACCGATCATCCTGTGGCCGTTCTACCTGTGTCTGTTTTTCCTGCTTGGACGGTTCGTTTACATCATTGTGAAGGCGGTACGCATCCATCTGAAGCTACAAGCTGATGAGAATGAAGAGGATCTACACTCCCATCAGTTCAGATACGTGCAAACTTTACTGAGACGTCCTCCTGAAAGCCCAGAACCGAAGAGTTGGTTCAGAAGAAAAGTGTATGACTGGGATCCATACTTTAAGTTCCCTAACAGGATGATTGGCACATCCATTATCTCCTTTATTGGCTTGTACATGaTGACACTGGCAGACTACAGATTGAGCGAGTACACCTTTGACAAACTGGACTCTTTGAAGGACTCACTTGAACAGATAGCATTGTCCTGCAATCAGACTGAGAGTGTGTTCACATACCTTATTCCCAGCATCAATGAGTTCAGCATTGTTGCACGAAggTCTTGGTTGGCGACAACCATTTTTTCCACGCTGACATCTGTTACTTACACATTTCACGTACTGGTGTGTTACAGGAAACATTTGAAGAGGTTGTGGCGGGGACAGAAGTCTTTTCTTCCAGAGAAGTTCCACACGCCAAGTCCTGCAGTCAGTGTGGCTGCTATAACAAGATATTCAGGCTGGCAGATTGCTTTCACTCTGTGGGGGTTTCTGATAGTTCACTTCGTACAGTTTCTGTTTGTCTTAATGTTTGTGTATGGAGTTGTTCTACCAATCCAGAAAGGACACATTCTCAGCTGGCTTTCCAATGTAGGCATCATTCTGTTGACAATATTTATAGTTATAGCTTTGGTGGTCCTGCAGATTATTTTGGTCCAAGTGTTTTTCCTGCAGGACAAACTCTCCCCTGAAGACAAAGAAAAGCCCCTTGCAATAAACAATAGAAAAGCATTTCACAGCTTCAATTACTTTTTCTTCTTCTATAATGTGATTATGGGGTTGAGCAACTGCGTTTTACGCCTTGTGAGCAGCTGCATTGTGGGAACATGGCTAGTGTCAAGGATTGATCGGACAATCATGCAACGTGGTTATGAATCCATGGATCCAGGATACAGTACATGGATAGGGATGATTTTTGCTGATCATTACCACAGTAACCCAGTTATGGTGTCTTTCTGCCATCTGCTGCTTGGCAGAACACTGGAGAAAGGAGGACCTGCAGCGTGTTCCTATGCAACTTTTAGCAATAACacagGGTGTTCAGTAGGGGGCAGAGTACGCCTGCGCTGgcttgtcctttacacactgcTGAGAAATCCTTCACTCATCCTGCTGAGAAAGACAAAGAAACTGCCACAGACCGACAGTCCTGACCCGCTCCTCTTGGCCCGAGCCATCACCTCACAGGCTCAACAAGCAGATGCAGTCTGTAACAAAACTGCTGAGACAGAACCAGCACCGCTAGACATCTGAAAGAGCTGAAGCATGAACCGGATCCTGGAGAGCAAGAGTATCAGGGTTTCTCTCGGTGTAGAGAGAGCTTTTTGTCTCCTTTTGAGGTCATTGACATACTATTGCACTACGTTTGCAGGATGTAGACTTTTTTTTGTGTACAAAATGGTCGATGGATTCACTGCATGCCCGTTTTTGGTTCAATAGCATGCTCTTGAGAACGAGAATGTACTTTAAAGTGCAACTGTGATCATCAAAGCCATTTAAAAGACTCCTTGAATTTCATCAGAGAACAGAGACAAGTCTGCATTTGGAGATGCGCTGGAGCTTCCTATTTtccttttatgtttgttttttaagtattttgtaaTACAAAATGCAGTCTTAAAAATTTATTGGTTTTATTGGGCTTAAACATCTGTGGAATCCACAAAAGT
>TCONS_00000283
gggggcAATGCCCCCCTTTGCCCCCTCGTAGCGCCGGGCCTGACTATAGTTAACACTACAGTACAAAATTTGTTAGTACTATAATATTGTgaactatagtatggttcaagaACACTAAGATAGGATCTACTTTAAactactacagtattttttttcacaTGGGCTGTTTGGAACCATAGTTAACATTGTTTCCTctgctttattaatatgcatacaTCCTTACACTTCTGTCGTGGTATATTTGTAATATGGTTGTATAATTTTCTGTGTTTCAGGTCTTCATTATGTTTCTGCTCTCATTAGTGCAGCGGCGAGCCAGGGCTCAGCCTTTTGAGGACCGCTTTCCATATCTCAAGGGCCGATTCGGCATTGTGGTGCCACTAGATTTCATTGGCAGTCTAAGTAACCGATGGTCTTACGGTTTCGCATTTGGTGCCATTGCTCCCAGCGTGATTCAGCTCTTCTCTGAGTCCTACGCACCATTTTATGTGCCTAACTGGGCTAAAGCCATTGTGTACCTGATAGGAGCGATAGAAGTTGGTGTGGCCTACCTGCCGTTCTTCGCTTGTCTTTCAACACCACACCGAGTGCTCGGAGGGATTTTAGGTCTTCTCTACACGCTCATGTGGCTCATTGTGAGACTGTATGACACGATAACCTGCCCTGCGGGAAAGATTTTAGGTCCTTATGAGAAACCGATCATCCTGTGGCCGTTCTACCTGTGTCTGTTTTTCCTGCTTGGACGGTTCGTTTACATCATTGTGAAGGCGGTACGCATCCATCTGAAGCTACAAGCTGATGAGAATGAAGAGGATCTACACTCCCATCAGTTCAGATACGTGCAAACTTTACTGAGACGTCCTCCTGAAAGCCCAGAACCGAAGAGTTGGTTCAGAAGAAAAGTGTATGACTGGGATCCATACTTTAAGTTCCCTAACAGGATGATTGGCACATCCATTATCTCCTTTATTGGCTTGTACATGaTGACACTGGCAGACTACAGATTGAGCGAGTACACCTTTGACAAACTGGACTCTTTGAAGGACTCACTTGAACAGATAGCATTGTCCTGCAATCAGACTGAGAGTGTGTTCACATACCTTATTCCCAGCATCAATGAGTTCAGCATTGTTGCACGAAggTCTTGGTTGGCGACAACCATTTTTTCCACGCTGACATCTGTTACTTACACATTTCACGTACTGGTGTGTTACAGGAAACATTTGAAGAGGTTGTGGCGGGGACAGAAGTCTTTTCTTCCAGAGAAGTTCCACACGCCAAGTCCTGCAGTCAGTGTGGCTGCTATAACAAGATATTCAGGCTGGCAGATTGCTTTCACTCTGTGGGGGTTTCTGATAGTTCACTTCGTACAGTTTCTGTTTGTCTTAATGTTTGTGTATGGAGTTGTTCTACCAATCCAGAAAGGACACATTCTCAGCTGGCTTTCCAATGTAGGCATCATTCTGTTGACAATATTTATAGTTATAGCTTTGGTGGTCCTGCAGATTATTTTGGTCCAAGTGTTTTTCCTGCAGGACAAACTCTCCCCTGAAGACAAAGAAAAGCCCCTTGCAATAAACAATAGAAAAGCATTTCACAGCTTCAATTACTTTTTCTTCTTCTATAATGTGATTATGGGGTTGAGCAACTGCGTTTTACGCCTTGTGAGCAGCTGCATTGTGGGAACATGGCTAGTGTCAAGGATTGATCGGACAATCATGCAACGTGGTTATGAATCCATGGATCCAGGATACAGTACATGGATAGGGATGATTTTTGCTGATCATTACCACAGTAACCCAGTTATGGTGTCTTTCTGCCATCTGCTGCTTGGCAGAACACTGGAGAAAGGAGGACCTGCAGCGTGTTCCTATGCAACTTTTAGCAATAACacagGGTGTTCAGTAGGGGGCAGAGTACGCCTGCGCTGgcttgtcctttacacactgcTGAGAAATCCTTCACTCATCCTGCTGAGAAAGACAAAGAAACTGCCACAGACCGACAGTCCTGACCCGCTCCTCTTGGCCCGAGCCATCACCTCACAGGCTCAACAAGCAGATGCAGTCTGTAACAAAACTGCTGAGACAGAACCAGCACCGCTAGACATCTGAAAGAGCTGAAGCATGAACCGGATCCTGGAGAGCAAGAGTATCAGGGTTTCTCTCGGTGTAGAGAGAGCTTTTTGTCTCCTTTTGAGGTCATTGACATACTATTGCACTACGTTTGCAGGATGTAGACTTTTTTTTGTGTACAAAATGGTCGATGGATTCACTGCATGCCCGTTTTTGGTTCAATAGCATGCTCTTGAGAACGAGAATGTACTTTAAAGTGCAACTGTGATCATCAAAGCCATTTAAAAGACTCCTTGAATTTCATCAGAGAACAGAGACAAGTCTGCATTTGGAGATGCGCTGGAGCTTCCTATTTtccttttatgtttgttttttaagtattttgtaaTACAAAATGCAGTCTTAAAAATTTATTGGTTTTATTGGGCTTAAACATCTGTGGAATCCACAAAAGTTTCAGTATAGGGGGAAAAGGTGTTttgattattaaattgttttcacACTCTTTTGTATGTTTATGAATTGGGATTTTACTATAATAATCGTGCAGTTATTTatgttcattcatgcattcatttttctttggctaaGCCTCTTctttttcagaggtcgccacagtggaatgaaccgccaacttatttagcatatgtttatgcccttccagctgaatgAGTTCTCAGTTTGTGGCCAACATTATTGAATTCATATTTGTTTAGTTATTATTGTGCAAAACATCTAGAAAAACATAGAATATATCTTACAATATAGATATAGAAAAAAACACACGTTTGcacaaaaataaatgagtaaatgttatCATCTACTCATCCTTTAGGCCAGGGATTcctaaacttttcagcctgcgacccccaaaatatcaatgccagtgactcgcgacccccaatattttctaggtcaggggtggccatccctgttcctggagagccaccttcctgcagatttcagttgcaacccatatcaaacacacctgtctgtaattatcaagtgttcAGGCCCTAATTAATTAGttcgggtgtgtttgatatgggtagcaactgaaatctgcaggaaggtggctcttcaggaacagggttggccacccatGTTctaggtggttataaatacagaaaccttgcatgcaagggtgcacacacaccaatacacccaagtctattcttcattgaatttttttatggatttcagtgctgtaaatgtgccagaaagtttaacctggtgttataaaatcaatcttctgcatctgacactattgctgtgtctttaatataatgtaattaccccaggggtcgcaatccaatagaactagtaactataagttactataataactatatagtaactataaatgactattttttcttttcaataggttatggataaaatatggtaattcttatggtttaaaataaataaatagatttttggaaatcaccaggccaccccccttcattgtcccttCGGacgtcccgacccccactttgagaaccactgctttaggctacttgtttcaaacctttatgagtttctttcttaggTAGATATTACAtagatatatattatattcattcattctgtcattttccttcagcttagtctctatttcagagcctgccacagcggaataaaccgccaactattccagcatatgtttaacgcagtggTTGCCTTTCCAGCATtgagaaacatctatacacactctcactatacacactctcacacactacagctaattttagttaattcaattcacctataccgcatgtctttggactgtttgggaaaccggagcacccgaagaaaacccacatgaacatggggagaacattcaaactccacacagaattgcctcCTGACCCAGCAGGGATTTGGAACAGTgagtgctgtgaggtgacaatgctaaccactaagtcaCTGTGCCACCcgaaaaaatgtttctgaaatgaTTTGGTCAAATCATCTATAATGTCTTTGTCTGATTTGTTCCTTCTATTCctttaataattttgataatttagGATGGTATAGTTATCCTATAACTAGAGTTAGGTATAACTactgaattgcattaatattttCAGGAATACAGTATGTTATGCATTACATTCACATTCATTACAATTACTAAAGTCAACAAGTTACTTACATTGCAAATTAAGTGTTAATAGAAACATGAACTTAGCATACACCTTGCACTGCAAATATTCGAtcttaaatttactgtaaattactggcTATTAATTGCATTACTTACACAGGAAGTCactgtaaattcacagtaaattactgtgaggtagttcaaaataacaatatttctgtaaatatttctaaatatcaaaaaagtgcCTGTACCAGAATAAAAGttcatgtttattaattttaatgatgaataaaataaagagtttttGGAATACCTATAACTAATGTGCAGAAGATGTAGCGCTTtatacagtaatttgctgtaatcatgatgcctgccctgggtcagttggcatttctgtgtggagtttgcatgttctccccgtgtttcccagtgatgtgttgcagttggaaggtcatccgctgggaaaaacatatgctggataagttggcggtttattccgctgtggcgaccccagattattaaagggactaagctgaaaagaaaatggagGAATGAATGATGCCTgtcttaatttcacaataaaattctgaattcagtttaattcatctttatttctttaacgtttttacaat
>TCONS_00000284
TTAACTTCCCGGCCATCGTTTTGTGTTCGAGTGAAGCATTTGTTGATGACATAATTGACTCTATTGATTTTTGTTTCCCTCCAGGGTTTCTGATAGTTCACTTCGTACAGTTTCTGTTTGTCTTAATGTTTGTGTATGGAGTTGTTCTACCAATCCAGAAAGGACACATTCTCAGCTGGCTTTCCAATGTAGGCATCATTCTGTTGACAATATTTATAGTTATAGCTTTGGTGGTCCTGCAGATTATTTTGGTCCAAGTGTTTTTCCTGCAGGACAAACTCTCCCCTGAAGACAAAGAAAAGCCCCTTGCAATAAACAATAGAAAAGCATTTCACAGCTTCAATTACTTTTTCTTCTTCTATAATGTGATTATGGGGTTGAGCAACTGCGTTTTACGCCTTGTGAGCAGCTGCATTGTGGGAACATGGCTAGTGTCAAGGATTGATCGGACAATCATGCAACGTGGTTATGAATCCATGGATCCAGGATACAGTACATGGATAGGGATGATTTTTGCTGATCATTACCACAGTAACCCAGTTATGGTGTCTTTCTGCCATCTGCTGCTTGGCAGAACACTGGA
>TCONS_00000285
CTAATATTTATCTAGAACATGCGTAGGTACCTTTAAactgtgttgttttttatgtatttgcagGTTGACAATATTTATAGTTATAGCTTTGGTGGTCCTGCAGATTATTTTGGTCCAAGTGTTTTTCCTGCAGGACAAACTCTCCCCTGAAGACAAAGAAAAGCCCCTTGCAATAAACAATAGAAAAGCATTTCACAGCTTCAATTACTTTTTCTTCTTCTATAATGTGATTATGGGGTTGAGCAACTGCGTTTTACGCCTTGTGAGCAGCTGCATTGTGGGAACATGGCTAGTGTCAAGGATTGATCGGACAATCATGCAACGTGGTTATGAATCCATGGATCCAGGATACAGTACATGGATAGGGATGATTTTTGCTGATCATTACCACAGTAACCCAGTTATGGTGTCTTTCTGCCATCTGCTGCTTGGCAGAACACTGGA

Function

symbol description
stra6l Acts upstream of or within several processes, including photoreceptor cell maintenance; photoreceptor cell outer segment organization; and retinol transport. Located in organelle membrane and plasma membrane. Is expressed in digestive system; endodermal cell; somite; and yolk syncytial layer.

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0071939 vitamin A import biological_process
GO:0007634 optokinetic behavior biological_process
GO:0034633 retinol transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0031090 organelle membrane cellular_component
GO:0031984 organelle subcompartment cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-116 Acts upstream of or within several processes, including photoreceptor cell maintenance; photoreceptor cell outer segment organization; and retinol transport. Located in organelle membrane and plasma membrane. Is expressed in digestive system; endodermal cell; somite; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000062467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000280 False 605 lncRNA 0.46 5 12172322 12181039
TCONS_00000281 False 947 mRNA 0.47 9 12177195 12182259
TCONS_00000282 False 2423 mRNA 0.45 17 12177266 12190943
TCONS_00000283 False 4826 mRNA 0.40 16 12178215 12193239
TCONS_00000284 False 583 lncRNA 0.41 4 12184497 12187708
TCONS_00000285 True 444 lncRNA 0.40 3 12186150 12187708

Neighbor

gene id symbol gene type direction distance location
XLOC_000158 spink4 coding upstream 33710 12135129 ~ 12138612 (+)
XLOC_000157 xpa coding upstream 74504 12068800 ~ 12097818 (+)
XLOC_000156 saraf coding upstream 113883 12049229 ~ 12058439 (+)
XLOC_000155 NA coding upstream 123813 12046492 ~ 12048509 (+)
XLOC_000154 slc24a2 coding upstream 127932 12009673 ~ 12044390 (+)
XLOC_000160 tdrd7a coding downstream 2461 12195700 ~ 12228116 (+)
XLOC_000161 tmod1 coding downstream 38239 12231478 ~ 12257979 (+)
XLOC_000162 gne coding downstream 101903 12295142 ~ 12334540 (+)
XLOC_000163 nansa coding downstream 142577 12335816 ~ 12344792 (+)
XLOC_000164 clta coding downstream 154974 12348213 ~ 12361930 (+)
XLOC_000152 NA non-coding upstream 238646 11933317 ~ 11933676 (+)
XLOC_000146 CU929311.1 non-coding upstream 702672 11469536 ~ 11469650 (+)
XLOC_000145 CU929103.1 non-coding upstream 791711 11380497 ~ 11380611 (+)
XLOC_000143 NA non-coding upstream 1385005 10780928 ~ 10787317 (+)
XLOC_000166 CT033816.1 non-coding downstream 238089 12431328 ~ 12431442 (+)
XLOC_000167 BX511261.1 non-coding downstream 350120 12543359 ~ 12543475 (+)
XLOC_000168 NA non-coding downstream 479746 12672985 ~ 12677022 (+)
XLOC_000169 CU550697.1 non-coding downstream 542681 12735920 ~ 12736034 (+)
XLOC_000171 BX323031.2 non-coding downstream 654822 12848061 ~ 12853263 (+)

Expression


Co-expression Network