XLOC_016013 (vapal)


Basic Information

Item Value
gene id XLOC_016013
gene name vapal
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 58377395 ~ 58431350 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031684
atttgtgttaGACTCTATAAAAAGCAAATCCTGGGAAATACGCATATTTACAGAAAAGTTTCTAGAATCTTCGTTAAATGTGAAGAATGTTATGGGTTCACTGTCCACGAGACCGAGCTAATATTGAATTTacaatttatattgaatttcTTTTCCAATATGGAGCTAATAAATCgagtttagttaaaaaaaaacgtaaaagcCCTGGTTCCAGCAGAGTGTGAGCGAGAGCAGCAGCCCGCCCCGCGCGCGCGCCTGTGACTCAGTGAAGGGTTTCGGATTGACCGCGCTGTTCTTCAGCTGCTCTCCGGAACCGAGCGTCTCTTCGCGGCCCGAATATGTCCAAACTGGAGCAAATTCTCGTCCTAGATCCTCCGAATGACCTGAAATTCAAAGGTCCTTTCACAGATGTGGTCACTGCGAACCTGAAGCTCAAGAATCCGTCAGAGAGGAAAGTATGTTTCAAAGTGAAGACGACAGCGCCGCGCAGATACTGCGTACGACCCAACAGCGGCATCATCGACCCAGGAGCCACGCTCACCATCTCAGTTATGCTGCAACCGTTTGATTACGACCCCAATGAGAAAAGCAAACACAAGTTCATGGTACAGACCATCTTCGCCCCGCCGGCAGTCTCAGACACAGAAGCCATGTGGAAAGACGCGAAACCCGATGAGCTCATGGATTCCAAACTCAGATGTGTGTTTGAGCTGCCGTCTGAAAACGATAAAGTGAATGAGGTGGACTCTGCGTGTAAAGTGCCCGTCCTGAACTCCTCTAAAGCGGACGGTCTGCTGTCGGTGAAGCCTCTGTCTGGAGCTCACGATGACTCTGAGATGCGGAGGATCCTGGAGGACTGCAAACGCCTGCAGACGGAGCTCAGCAAACTGCACGACGAGAACCGCCAGCTCAAGGATGAGGGACTGCGGCTGCGGCGGCTCCAGCCACGCACTGATCATGTGTCCAGCAACAGCAGCACGTCTGTGGGCCGTGACTCTGTGTCTGGCTCCCTGCCCTCGCTGCTGGTGGTCATCGCCGCCATCTTTATCGGCTTCTTCCTGGGGAAATTCATCCTGTAGAGCGTCTCAAATCACGAACTGAAGCTGCGTCTTCCCTCCAGACAAACTCCACGCGTTTTACTAAAACTCAGTGTTTTTAACCGGACGGACGGACGCGAGCCAGCGACACGTGCCTCCTTCCATGTACATTCGTTCTTCTTCTGTTCCTAACAATACCAACGCAGACTgttttattactgtaattatcattaattaattattattattattattattattcatgtactTTCTCTCAGAACAGCATTTATCCACACAGATGTTCACTCTACTGTCTCATATTAGACGACGttgaagaaataaaaacagaccaaaaAATACTGAAAGCCTCCTCGCTTGATTGTGTGGTTCTGTTTTGATTATTTGCTCATTTTTTCATCTGATTTTTACTGGATTAAAAATGATGATGCTGAGGAAAATATGGTTTAAttggcatttatttaattaaaaactcaacACTTTTGAGCTGCTGAAATACTTAAGGTttactaattatatatatatatcacacttaccggccactttattaggtacaccttactagtacagggttggaccccattttgtcTTCAGAACAGCCTTAACCCttcagattcaacaagctactggaaatattcctcagagattttgctccatattgtcatgatagcatcacacagttgctgcagatttgtcggctgctcatccatgatgccaatctcccgttccaccacatcccaaagctgctctattggattgaactctggtaactgtggaggccatttgagtacagtgaactcatcgtcatgttcaagaaaccagtctgagatgattgagcttcatgacatgctgcgttatcctgctggaagtagccatcagaagatggagacactgtgctcataaagggatggacatggtcagcagcagtactcaggtaggctgtggcgttgatgctcaattggtactaatggacccaaagtgtgccaagaaaatatcccattCTGGACCTGGAGTATTctggagcattctctgtaaaccctagagatggttgtgcatgaaaatcccagtagatcagcagtttctgaaatactcagagcagcccgtctgattaaaaatttgcattaatgagcagttggacaggtgtacgtaataaagtggccggtgagtgtatgtatcaAAGTACTTGTAACCATTTCTGTATATTCAATCTAGTAATAATTGATATATCGACCACATGTTAAACACTTTACACAATGCAAATTATTAGTctagatgttcttcaagacactagtgttcagcttaaagagacatgtaaaggcttcactagggtaatcagggtaaagtcagggtaattaggcaagtcattgtataactgtggtttgttctggagacaatccaacactaatattgctgaaggggtgattaatattgagcttaaaatggcttttataaaaataaaacaaataagactttctgcagaagaacaaatattactgttttttccaattgttcacacacattttctgtaagcaggtctcatattgtcagaTCTCTACACACAaaccacaaaacacacacacacacattggacaaaactcttcaattcttctgcaaaatgaaactctacGTTCAAAACagtgtgatttcttctcaaaatggcattttgtttacaaatgacacacaagccatcacatcAATAGACATTTATAAGAACAGTTGCACACTGATGTGCtgaatgtaaaacactatgaacacttcttctccattcatcataatgacCTACTGTCAGCCTTATtctgttcagtgttacacttactacagacatACATAAGCCTTCATAAGTGCACTAAAATATTacagaatattgttttatacaaaacaaacaaataccaaatacatttgactgtattttccccacaaaaactgtgtacacagtgttcatcccaaccaacacaaagttgcacatAACATGGTCCACATACCttcaacagaagtatttactgAATACAGTTACagtcaagaaataaaataaaataaaagcagctatactgcatcctcttttctgttttgttctGGCCAAGTAGCAAGGTAATCGTCACCTCGCATGGCGAATCCAGCCATGagaagcatcaactgctatagcttggagaagggtatacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatttcggtcacacactttacatctccaggcagaaaaaaaaaatcttcaacaggtttgaggaatggagaatatggagggagatAAACCACTAAAAACATGTGTGGGCAGTGAACCAGTTAcgaaccagatgagctctgatttctaaattacAATTCTGTGTGACAGACAgctgtttactcatgtgatgagttagtatgctgagtaggacaactgactttacaattgtgaatgacagtgtgttccttgtgaaaacaagagATTTTCCGCATGAAAACTGtgtaaaatgcagagaattgtgtgttgtgttttgaaaaaagtgatttaaatctgcaatttgagtgtaaagcaggaattgtgcttgtagtttagcagaattggttcagggggttggtgcacATCAGTTACATGTAGGGATGtgacggtatcagaatttcacggtatggtaatacctcggtatgaatgtaaCGGTAcagtttattgaataatttacaggaaaaacaaaactaatgaaaagactcgaaaaaagtgccaaaagtgtttatttacgttagcactgaacatatcaatgacacaaatcagccatctatctgtaagcttccaaacaggaacttcaatttttcaattttaataacaaaaaactataaaaccatgtaaaaaaataaagtttcaatttagttttgttgaaaactcatcacattcaacatttaatcactcactcactcagatagagatgggtttttaaggaaaatgatcatataactataatctggtgaaAGCTGGGAtgtctgggcatgtcccctgcaacagaaaataAACCCCTcccatttgggactgaggtttctgagacagagagatatgatttagccaaggttgacagcagtgggtaacggtctgcattgtctttcccccacttgagaggacaagtcatgagtgagatagaggtctctgtacggtacaagtcaatgtctgcatcaatctaacaagtgtgctgtgttctgcagtccccatgactgttattagtcgtgatccctgacttatatttcaccacagtctggcagtgcctgcatactgtttttgtccttgtcaccttttctcctttttcgtatctttttagagagaaaccgaaatgcttccacacatctgctTTAAACCCCGCTTTAGGTTTGATCATCTCCAGCTCTTGTTCTTCCctgcagcacactccatttctgcattactggatctgtagcgacagcaGACCGCAAAgcatgatggccacgcctgggctgatgggaactgtagttcccgctacctcccgttcacttcattcgcctgagcaaacttttctcagaaatgtagttttattgagtcatgcgcctacgctaatattgaaaacaattactattgcggtatgacggaatttacaatattgttacatccctagttacaTGTTGTAGAAACTGTGTCtgtagtacaagtaattgtgtgtaaacaactaagaaaaactgtaaaggaaatactgtgaaaaattcctgaatctgttcaacatcatttgggaaatactggAAAAAGCAGAAATAATTGACCTCAACTGCATATAATAGTAATTCTGAAGTCATTAAAG
>TCONS_00033336
tggagatggcaaaccacctttttccggtggagcaacATGGCCTCGGActttcttaatatatatatatatttttttttaccttttttattcTACTGTCTTGTTTTCATGATGAGATTCTTCTTCACTTTATTTaataatctgatttatttacttgtttttgttttcagattgttttaaatattgcttattattatttttaatattcaatgACCTGAGAACAAAAGATGAGGAGTTTTGAAGTAATTTTGACTCTGAATTTTAGAGTTTatctataaatgtgtgtgtgtgtgtgtgtgtgtgttgatgtttgtgtttttgtcacAGTTATGCTGCAACCGTTTGATTACGACCCCAATGAGAAAAGCAAACACAAGTTCATGGTACAGACCATCTTCGCCCCGCCGGCAGTCTCAGACACAGAAGCCATGTGGAAAGACGCGAAACCCGATGAGCTCATGGATTCCAAACTCAGATGTGTGTTTGAGCTGCCGTCTGAAAACGATAAAGTGAATGAGGTGGACTCTGCGTGTAAAGTGCCCGTCCTGAACTCCTCTAAAGCGGACGGTCTGCTGTCGGTGAAGCCTCTGTCTGGAGCTCACGATGACTCTGAGATGCG

Function

symbol description
vapal Predicted to enable FFAT motif binding activity. Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Is expressed in heart. Orthologous to human VAPA (VAMP associated protein A).

GO:

id name namespace
GO:0070972 protein localization to endoplasmic reticulum biological_process
GO:0031175 neuron projection development biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0033149 FFAT motif binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-281 Predicted to enable FFAT motif binding activity. Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Is expressed in heart. Orthologous to human VAPA (VAMP associated protein A).

Ensembl:

ensembl_id ENSDARG00000115862

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031684 False 4853 mRNA 0.41 6 58377395 58431350
TCONS_00033336 True 616 lncRNA 0.40 3 58414255 58425618

Neighbor

gene id symbol gene type direction distance location
XLOC_016012 KCNJ10 coding upstream 134530 58221163 ~ 58242865 (+)
XLOC_016011 NA coding upstream 202832 58143369 ~ 58174563 (+)
XLOC_016010 NA coding upstream 289094 58087770 ~ 58088301 (+)
XLOC_016009 NA coding upstream 353095 58023674 ~ 58024300 (+)
XLOC_016008 si:ch211-155e24.3 coding upstream 362743 58008980 ~ 58014652 (+)
XLOC_016014 CABZ01083448.1 coding downstream 307761 58739111 ~ 58742863 (+)
XLOC_016015 cirbpa coding downstream 409831 58841181 ~ 58848884 (+)
XLOC_016016 NA coding downstream 423146 58854496 ~ 58855890 (+)
XLOC_016017 NA coding downstream 434410 58865760 ~ 58868244 (+)
XLOC_016018 CABZ01085658.1 coding downstream 445812 58877162 ~ 58882502 (+)
XLOC_016007 NA non-coding upstream 378812 57998296 ~ 57998583 (+)
XLOC_016006 NA non-coding upstream 454679 57919451 ~ 57922716 (+)
XLOC_016019 CABZ01100278.1 non-coding downstream 563954 58995304 ~ 59013775 (+)
XLOC_016022 NA non-coding downstream 704873 59136223 ~ 59396565 (+)
XLOC_016023 NA non-coding downstream 712598 59143948 ~ 59345612 (+)

Expression


Co-expression Network